Strain Fitness in Shewanella loihica PV-4 around Shew_2095

Experiment: Furfuryl Alcohol 0.075 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2093 and Shew_2094 overlap by 8 nucleotidesShew_2094 and Shew_2095 overlap by 14 nucleotidesShew_2095 and Shew_2096 are separated by 2 nucleotides Shew_2093: Shew_2093 - thiamine biosynthesis protein ThiS (RefSeq), at 2,420,124 to 2,420,333 _2093 Shew_2094: Shew_2094 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 2,420,326 to 2,421,174 _2094 Shew_2095: Shew_2095 - phosphomethylpyrimidine kinase (RefSeq), at 2,421,161 to 2,422,906 _2095 Shew_2096: Shew_2096 - thiamine biosynthesis protein ThiC (RefSeq), at 2,422,909 to 2,424,960 _2096 Position (kb) 2421 2422 2423Strain fitness (log2 ratio) -2 -1 0 1 2at 2420.359 kb on + strandat 2420.367 kb on - strandat 2420.726 kb on + strand, within Shew_2094at 2420.810 kb on + strand, within Shew_2094at 2420.918 kb on + strand, within Shew_2094at 2421.046 kb on - strand, within Shew_2094at 2421.179 kb on - strandat 2421.413 kb on - strand, within Shew_2095at 2421.438 kb on + strand, within Shew_2095at 2421.899 kb on + strand, within Shew_2095at 2422.252 kb on - strand, within Shew_2095at 2422.306 kb on + strand, within Shew_2095at 2422.319 kb on - strand, within Shew_2095at 2422.388 kb on - strand, within Shew_2095at 2422.398 kb on - strand, within Shew_2095at 2422.408 kb on + strand, within Shew_2095at 2422.593 kb on + strand, within Shew_2095at 2422.663 kb on + strand, within Shew_2095at 2422.663 kb on + strand, within Shew_2095at 2422.663 kb on + strand, within Shew_2095at 2423.079 kb on - strandat 2423.192 kb on - strand, within Shew_2096at 2423.192 kb on - strand, within Shew_2096

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.075 vol%
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2,420,359 + -1.0
2,420,367 - +0.1
2,420,726 + Shew_2094 0.47 +2.0
2,420,810 + Shew_2094 0.57 +0.3
2,420,918 + Shew_2094 0.70 +1.3
2,421,046 - Shew_2094 0.85 -0.5
2,421,179 - +0.2
2,421,413 - Shew_2095 0.14 +2.6
2,421,438 + Shew_2095 0.16 -0.1
2,421,899 + Shew_2095 0.42 -0.6
2,422,252 - Shew_2095 0.62 +1.0
2,422,306 + Shew_2095 0.66 +1.1
2,422,319 - Shew_2095 0.66 +1.2
2,422,388 - Shew_2095 0.70 +0.2
2,422,398 - Shew_2095 0.71 +0.3
2,422,408 + Shew_2095 0.71 +1.3
2,422,593 + Shew_2095 0.82 -1.6
2,422,663 + Shew_2095 0.86 -1.1
2,422,663 + Shew_2095 0.86 +0.4
2,422,663 + Shew_2095 0.86 +1.1
2,423,079 - -0.2
2,423,192 - Shew_2096 0.14 -0.2
2,423,192 - Shew_2096 0.14 -1.8

Or see this region's nucleotide sequence