Strain Fitness in Shewanella loihica PV-4 around Shew_1905

Experiment: Furfuryl Alcohol 0.075 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1904 and Shew_1905 are separated by 163 nucleotidesShew_1905 and Shew_1906 are separated by 188 nucleotidesShew_1906 and Shew_1907 are separated by 280 nucleotides Shew_1904: Shew_1904 - tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit (RefSeq), at 2,199,247 to 2,200,770 _1904 Shew_1905: Shew_1905 - peptidase S9 prolyl oligopeptidase (RefSeq), at 2,200,934 to 2,202,991 _1905 Shew_1906: Shew_1906 - GCN5-related N-acetyltransferase (RefSeq), at 2,203,180 to 2,203,593 _1906 Shew_1907: Shew_1907 - glutathione-dependent formaldehyde-activating, GFA (RefSeq), at 2,203,874 to 2,204,302 _1907 Position (kb) 2200 2201 2202 2203Strain fitness (log2 ratio) -1 0 1at 2201.351 kb on - strand, within Shew_1905at 2202.865 kb on + strandat 2202.873 kb on - strandat 2202.902 kb on + strandat 2203.231 kb on - strand, within Shew_1906at 2203.544 kb on + strand, within Shew_1906at 2203.552 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.075 vol%
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2,201,351 - Shew_1905 0.20 -1.7
2,202,865 + +0.3
2,202,873 - +0.3
2,202,902 + -1.2
2,203,231 - Shew_1906 0.12 -1.4
2,203,544 + Shew_1906 0.88 +1.0
2,203,552 - -0.1

Or see this region's nucleotide sequence