Strain Fitness in Shewanella loihica PV-4 around Shew_1837

Experiment: Furfuryl Alcohol 0.075 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1836 and Shew_1837 are separated by 197 nucleotidesShew_1837 and Shew_1838 are separated by 90 nucleotidesShew_1838 and Shew_1839 are separated by 130 nucleotides Shew_1836: Shew_1836 - uracil-xanthine permease (RefSeq), at 2,112,798 to 2,114,033 _1836 Shew_1837: Shew_1837 - hypothetical protein (RefSeq), at 2,114,231 to 2,115,361 _1837 Shew_1838: Shew_1838 - DNA replication initiation factor (RefSeq), at 2,115,452 to 2,116,162 _1838 Shew_1839: Shew_1839 - hypothetical protein (RefSeq), at 2,116,293 to 2,116,664 _1839 Position (kb) 2114 2115 2116Strain fitness (log2 ratio) -2 -1 0 1at 2113.549 kb on - strand, within Shew_1836at 2113.796 kb on - strand, within Shew_1836at 2114.457 kb on - strand, within Shew_1837at 2115.446 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.075 vol%
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2,113,549 - Shew_1836 0.61 -1.5
2,113,796 - Shew_1836 0.81 +0.8
2,114,457 - Shew_1837 0.20 -2.0
2,115,446 + +0.3

Or see this region's nucleotide sequence