Strain Fitness in Shewanella loihica PV-4 around Shew_1822

Experiment: Furfuryl Alcohol 0.075 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1821 and Shew_1822 are separated by 86 nucleotidesShew_1822 and Shew_1823 are separated by 58 nucleotides Shew_1821: Shew_1821 - 2-methylcitrate synthase/citrate synthase II (RefSeq), at 2,093,970 to 2,095,094 _1821 Shew_1822: Shew_1822 - aconitate hydratase (RefSeq), at 2,095,181 to 2,097,769 _1822 Shew_1823: Shew_1823 - putative AcnD-accessory protein PrpF (RefSeq), at 2,097,828 to 2,098,997 _1823 Position (kb) 2095 2096 2097 2098Strain fitness (log2 ratio) -1 0 1 2 3at 2094.445 kb on + strand, within Shew_1821at 2094.804 kb on - strand, within Shew_1821at 2095.654 kb on - strand, within Shew_1822at 2096.152 kb on + strand, within Shew_1822at 2096.160 kb on - strand, within Shew_1822at 2096.516 kb on - strand, within Shew_1822at 2096.517 kb on - strand, within Shew_1822at 2098.738 kb on - strand, within Shew_1823

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.075 vol%
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2,094,445 + Shew_1821 0.42 +0.3
2,094,804 - Shew_1821 0.74 +0.3
2,095,654 - Shew_1822 0.18 +3.6
2,096,152 + Shew_1822 0.38 +3.4
2,096,160 - Shew_1822 0.38 +3.6
2,096,516 - Shew_1822 0.52 +2.9
2,096,517 - Shew_1822 0.52 +3.3
2,098,738 - Shew_1823 0.78 +3.6

Or see this region's nucleotide sequence