Experiment: Furfuryl Alcohol 0.075 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1767 and Shew_1768 are separated by 418 nucleotides Shew_1768 and Shew_1769 are separated by 33 nucleotides Shew_1769 and Shew_1770 overlap by 4 nucleotides Shew_1770 and Shew_1771 are separated by 11 nucleotides Shew_1771 and Shew_1772 are separated by 10 nucleotides
Shew_1767: Shew_1767 - ATP-dependent helicase HrpA (RefSeq), at 2,019,461 to 2,023,348
_1767
Shew_1768: Shew_1768 - periplasmic nitrate reductase NapE (RefSeq), at 2,023,767 to 2,023,925
_1768
Shew_1769: Shew_1769 - NapD family protein (RefSeq), at 2,023,959 to 2,024,222
_1769
Shew_1770: Shew_1770 - nitrate reductase (RefSeq), at 2,024,219 to 2,026,714
_1770
Shew_1771: Shew_1771 - nitrate reductase cytochrome c-type subunit (NapB) (RefSeq), at 2,026,726 to 2,027,205
_1771
Shew_1772: Shew_1772 - NapC/NirT family periplasmic nitrate (or nitrite) reductase c-type cytochrome (RefSeq), at 2,027,216 to 2,027,803
_1772
Position (kb)
2024
2025
2026
2027 Strain fitness (log2 ratio)
-2
-1
0
1 at 2023.763 kb on + strand at 2023.847 kb on - strand, within Shew_1768 at 2023.859 kb on - strand, within Shew_1768 at 2023.928 kb on - strand at 2023.961 kb on - strand at 2024.168 kb on + strand, within Shew_1769 at 2024.322 kb on + strand at 2024.520 kb on + strand, within Shew_1770 at 2024.817 kb on - strand, within Shew_1770 at 2026.100 kb on + strand, within Shew_1770 at 2026.165 kb on + strand, within Shew_1770 at 2026.649 kb on - strand at 2026.783 kb on + strand, within Shew_1771 at 2026.783 kb on + strand, within Shew_1771 at 2027.029 kb on + strand, within Shew_1771 at 2027.150 kb on + strand, within Shew_1771 at 2027.157 kb on - strand, within Shew_1771 at 2027.246 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.075 vol% remove 2,023,763 + +0.1 2,023,847 - Shew_1768 0.50 -2.0 2,023,859 - Shew_1768 0.58 +0.7 2,023,928 - -0.1 2,023,961 - -0.6 2,024,168 + Shew_1769 0.79 -0.7 2,024,322 + +0.4 2,024,520 + Shew_1770 0.12 -0.2 2,024,817 - Shew_1770 0.24 +0.7 2,026,100 + Shew_1770 0.75 +0.3 2,026,165 + Shew_1770 0.78 +0.7 2,026,649 - -0.5 2,026,783 + Shew_1771 0.12 +0.7 2,026,783 + Shew_1771 0.12 +0.0 2,027,029 + Shew_1771 0.63 +0.4 2,027,150 + Shew_1771 0.88 -0.2 2,027,157 - Shew_1771 0.90 +1.2 2,027,246 + -0.3
Or see this region's nucleotide sequence