Strain Fitness in Shewanella loihica PV-4 around Shew_1721

Experiment: Furfuryl Alcohol 0.075 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1720 and Shew_1721 are separated by 86 nucleotidesShew_1721 and Shew_1722 are separated by 15 nucleotides Shew_1720: Shew_1720 - 8-amino-7-oxononanoate synthase (RefSeq), at 1,973,989 to 1,975,137 _1720 Shew_1721: Shew_1721 - methyltransferase type 11 (RefSeq), at 1,975,224 to 1,976,153 _1721 Shew_1722: Shew_1722 - dethiobiotin synthase (RefSeq), at 1,976,169 to 1,976,882 _1722 Position (kb) 1975 1976 1977Strain fitness (log2 ratio) -1 0 1at 1975.321 kb on + strand, within Shew_1721at 1975.850 kb on + strand, within Shew_1721at 1976.853 kb on - strandat 1977.018 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.075 vol%
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1,975,321 + Shew_1721 0.10 -1.2
1,975,850 + Shew_1721 0.67 -0.6
1,976,853 - +0.6
1,977,018 + +1.0

Or see this region's nucleotide sequence