Strain Fitness in Shewanella loihica PV-4 around Shew_1645

Experiment: Furfuryl Alcohol 0.075 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1644 and Shew_1645 are separated by 33 nucleotidesShew_1645 and Shew_1646 are separated by 476 nucleotides Shew_1644: Shew_1644 - DSBA oxidoreductase (RefSeq), at 1,885,352 to 1,886,140 _1644 Shew_1645: Shew_1645 - sigma-54 dependent trancsriptional regulator (RefSeq), at 1,886,174 to 1,887,544 _1645 Shew_1646: Shew_1646 - beta-lactamase domain-containing protein (RefSeq), at 1,888,021 to 1,888,899 _1646 Position (kb) 1886 1887 1888Strain fitness (log2 ratio) -1 0 1 2at 1885.260 kb on + strandat 1885.349 kb on - strandat 1885.431 kb on - strand, within Shew_1644at 1886.572 kb on + strand, within Shew_1645at 1887.389 kb on + strand, within Shew_1645at 1887.397 kb on - strand, within Shew_1645at 1887.735 kb on - strandat 1887.921 kb on + strandat 1887.979 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.075 vol%
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1,885,260 + -0.6
1,885,349 - -0.1
1,885,431 - Shew_1644 0.10 +1.8
1,886,572 + Shew_1645 0.29 +1.4
1,887,389 + Shew_1645 0.89 -0.9
1,887,397 - Shew_1645 0.89 -0.6
1,887,735 - -0.1
1,887,921 + +1.2
1,887,979 - +0.1

Or see this region's nucleotide sequence