Strain Fitness in Shewanella loihica PV-4 around Shew_1627

Experiment: Furfuryl Alcohol 0.075 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1626 and Shew_1627 are separated by 75 nucleotidesShew_1627 and Shew_1628 are separated by 556 nucleotidesShew_1628 and Shew_1629 are separated by 39 nucleotides Shew_1626: Shew_1626 - beta-hexosaminidase (RefSeq), at 1,859,477 to 1,860,478 _1626 Shew_1627: Shew_1627 - hypothetical protein (RefSeq), at 1,860,554 to 1,861,096 _1627 Shew_1628: Shew_1628 - acylphosphatase (RefSeq), at 1,861,653 to 1,861,922 _1628 Shew_1629: Shew_1629 - hypothetical protein (RefSeq), at 1,861,962 to 1,862,900 _1629 Position (kb) 1860 1861 1862Strain fitness (log2 ratio) -1 0 1at 1860.034 kb on - strand, within Shew_1626at 1860.203 kb on - strand, within Shew_1626at 1860.360 kb on + strand, within Shew_1626at 1860.471 kb on - strandat 1860.999 kb on - strand, within Shew_1627at 1861.693 kb on - strand, within Shew_1628

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.075 vol%
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1,860,034 - Shew_1626 0.56 +0.5
1,860,203 - Shew_1626 0.72 -0.2
1,860,360 + Shew_1626 0.88 +0.5
1,860,471 - -1.5
1,860,999 - Shew_1627 0.82 -0.5
1,861,693 - Shew_1628 0.15 +0.0

Or see this region's nucleotide sequence