Strain Fitness in Shewanella loihica PV-4 around Shew_1546

Experiment: Furfuryl Alcohol 0.075 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1545 and Shew_1546 are separated by 250 nucleotidesShew_1546 and Shew_1547 are separated by 153 nucleotides Shew_1545: Shew_1545 - two component LuxR family transcriptional regulator (RefSeq), at 1,773,734 to 1,774,393 _1545 Shew_1546: Shew_1546 - thioesterase superfamily protein (RefSeq), at 1,774,644 to 1,775,069 _1546 Shew_1547: Shew_1547 - phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq), at 1,775,223 to 1,776,284 _1547 Position (kb) 1774 1775 1776Strain fitness (log2 ratio) -3 -2 -1 0 1at 1773.686 kb on + strandat 1773.740 kb on - strandat 1774.197 kb on - strand, within Shew_1545at 1774.574 kb on + strandat 1774.574 kb on + strandat 1774.937 kb on - strand, within Shew_1546at 1775.824 kb on + strand, within Shew_1547

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.075 vol%
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1,773,686 + +0.2
1,773,740 - +0.2
1,774,197 - Shew_1545 0.70 +1.7
1,774,574 + +0.1
1,774,574 + +0.9
1,774,937 - Shew_1546 0.69 +1.4
1,775,824 + Shew_1547 0.57 -2.9

Or see this region's nucleotide sequence