Strain Fitness in Shewanella loihica PV-4 around Shew_1537

Experiment: Furfuryl Alcohol 0.075 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1536 and Shew_1537 are separated by 321 nucleotidesShew_1537 and Shew_1538 are separated by 176 nucleotidesShew_1538 and Shew_1539 are separated by 102 nucleotides Shew_1536: Shew_1536 - putative chloramphenicol acetyltransferase (RefSeq), at 1,764,380 to 1,765,006 _1536 Shew_1537: Shew_1537 - FAD dependent oxidoreductase (RefSeq), at 1,765,328 to 1,766,617 _1537 Shew_1538: Shew_1538 - hypothetical protein (RefSeq), at 1,766,794 to 1,767,039 _1538 Shew_1539: Shew_1539 - LysR family transcriptional regulator (RefSeq), at 1,767,142 to 1,768,011 _1539 Position (kb) 1765 1766 1767Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1764.503 kb on - strand, within Shew_1536at 1764.805 kb on + strand, within Shew_1536at 1764.813 kb on - strand, within Shew_1536at 1765.487 kb on - strand, within Shew_1537at 1765.717 kb on - strand, within Shew_1537at 1765.864 kb on - strand, within Shew_1537at 1766.157 kb on - strand, within Shew_1537at 1766.316 kb on + strand, within Shew_1537at 1766.325 kb on - strand, within Shew_1537at 1766.547 kb on + strandat 1766.568 kb on + strandat 1766.640 kb on - strandat 1766.789 kb on + strandat 1767.140 kb on + strandat 1767.147 kb on - strandat 1767.148 kb on - strandat 1767.148 kb on - strandat 1767.202 kb on + strandat 1767.470 kb on - strand, within Shew_1539at 1767.480 kb on - strand, within Shew_1539

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.075 vol%
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1,764,503 - Shew_1536 0.20 -1.6
1,764,805 + Shew_1536 0.68 +0.5
1,764,813 - Shew_1536 0.69 +1.0
1,765,487 - Shew_1537 0.12 -0.8
1,765,717 - Shew_1537 0.30 +0.0
1,765,864 - Shew_1537 0.42 +1.8
1,766,157 - Shew_1537 0.64 -0.6
1,766,316 + Shew_1537 0.77 -0.4
1,766,325 - Shew_1537 0.77 -0.2
1,766,547 + -3.2
1,766,568 + +0.2
1,766,640 - -0.7
1,766,789 + +0.3
1,767,140 + +0.8
1,767,147 - -0.3
1,767,148 - +0.5
1,767,148 - -0.0
1,767,202 + -0.7
1,767,470 - Shew_1539 0.38 +0.2
1,767,480 - Shew_1539 0.39 -1.1

Or see this region's nucleotide sequence