Strain Fitness in Shewanella loihica PV-4 around Shew_1276
Experiment: Furfuryl Alcohol 0.075 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Furfuryl Alcohol 0.075 vol% |
---|---|---|---|---|---|
remove | |||||
1,474,997 | + | Shew_1275 | 0.44 | +0.0 | |
1,475,005 | - | Shew_1275 | 0.45 | -0.7 | |
1,475,063 | + | Shew_1275 | 0.48 | -0.1 | |
1,475,106 | - | Shew_1275 | 0.51 | +0.4 | |
1,475,144 | - | Shew_1275 | 0.53 | +0.5 | |
1,475,678 | + | Shew_1275 | 0.86 | -0.0 | |
1,475,880 | - | +0.3 | |||
1,476,052 | + | +5.4 | |||
1,476,134 | + | Shew_1276 | 0.11 | +0.4 | |
1,476,386 | - | Shew_1276 | 0.29 | +1.1 | |
1,476,431 | - | Shew_1276 | 0.33 | -0.6 | |
1,477,162 | - | Shew_1276 | 0.87 | +1.5 | |
1,477,170 | - | Shew_1276 | 0.87 | +0.2 | |
1,477,299 | - | -0.4 | |||
1,477,826 | + | +0.4 | |||
1,477,854 | + | Shew_1277 | 0.11 | +0.4 | |
1,477,922 | + | Shew_1277 | 0.16 | +0.3 | |
1,478,027 | - | Shew_1277 | 0.23 | +0.7 | |
1,478,046 | + | Shew_1277 | 0.25 | +0.2 | |
1,478,049 | - | Shew_1277 | 0.25 | -1.6 | |
1,478,139 | - | Shew_1277 | 0.31 | +0.4 | |
1,478,178 | + | Shew_1277 | 0.34 | +0.4 | |
1,478,178 | + | Shew_1277 | 0.34 | -2.1 |
Or see this region's nucleotide sequence