Strain Fitness in Shewanella loihica PV-4 around Shew_0977

Experiment: Furfuryl Alcohol 0.075 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0975 and Shew_0976 overlap by 4 nucleotidesShew_0976 and Shew_0977 are separated by 83 nucleotidesShew_0977 and Shew_0978 are separated by 96 nucleotides Shew_0975: Shew_0975 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,120,053 to 1,120,958 _0975 Shew_0976: Shew_0976 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,120,955 to 1,121,782 _0976 Shew_0977: Shew_0977 - FAD dependent oxidoreductase (RefSeq), at 1,121,866 to 1,123,152 _0977 Shew_0978: Shew_0978 - band 7 protein (RefSeq), at 1,123,249 to 1,124,187 _0978 Position (kb) 1121 1122 1123 1124Strain fitness (log2 ratio) -2 -1 0 1at 1120.939 kb on - strandat 1121.154 kb on + strand, within Shew_0976at 1121.162 kb on - strand, within Shew_0976at 1121.494 kb on + strand, within Shew_0976at 1121.790 kb on + strandat 1121.870 kb on + strandat 1121.876 kb on - strandat 1121.878 kb on - strandat 1122.028 kb on - strand, within Shew_0977at 1122.274 kb on + strand, within Shew_0977at 1122.477 kb on - strand, within Shew_0977at 1122.541 kb on - strand, within Shew_0977at 1122.593 kb on - strand, within Shew_0977at 1122.655 kb on - strand, within Shew_0977at 1122.746 kb on - strand, within Shew_0977at 1122.965 kb on + strand, within Shew_0977at 1123.068 kb on - strandat 1123.119 kb on + strandat 1123.127 kb on - strandat 1123.133 kb on + strandat 1123.465 kb on + strand, within Shew_0978at 1123.619 kb on - strand, within Shew_0978at 1123.821 kb on + strand, within Shew_0978at 1124.011 kb on - strand, within Shew_0978

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.075 vol%
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1,120,939 - +1.1
1,121,154 + Shew_0976 0.24 +0.1
1,121,162 - Shew_0976 0.25 -0.1
1,121,494 + Shew_0976 0.65 -0.6
1,121,790 + -0.1
1,121,870 + +0.7
1,121,876 - +0.2
1,121,878 - +0.1
1,122,028 - Shew_0977 0.13 -0.4
1,122,274 + Shew_0977 0.32 +0.3
1,122,477 - Shew_0977 0.47 -2.5
1,122,541 - Shew_0977 0.52 -1.4
1,122,593 - Shew_0977 0.56 +0.2
1,122,655 - Shew_0977 0.61 -1.9
1,122,746 - Shew_0977 0.68 +0.8
1,122,965 + Shew_0977 0.85 +0.2
1,123,068 - +0.0
1,123,119 + -0.1
1,123,127 - +0.0
1,123,133 + +0.4
1,123,465 + Shew_0978 0.23 -1.8
1,123,619 - Shew_0978 0.39 +0.2
1,123,821 + Shew_0978 0.61 -1.6
1,124,011 - Shew_0978 0.81 +0.3

Or see this region's nucleotide sequence