Experiment: Furfuryl Alcohol 0.075 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0841 and Shew_0842 are separated by 91 nucleotides Shew_0842 and Shew_0843 are separated by 61 nucleotides Shew_0843 and nrfA are separated by 247 nucleotides
Shew_0841: Shew_0841 - hypothetical protein (RefSeq), at 964,006 to 964,380
_0841
Shew_0842: Shew_0842 - two component LuxR family transcriptional regulator (RefSeq), at 964,472 to 965,101
_0842
Shew_0843: Shew_0843 - nitrate/nitrite sensor protein NarQ (RefSeq), at 965,163 to 966,866
_0843
Shew_0844: nrfA - cytochrome c nitrite reductase (RefSeq), at 967,114 to 968,514
nrfA
Position (kb) 965
966
967 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 964.169 kb on - strand, within Shew_0841 at 964.210 kb on - strand, within Shew_0841 at 964.252 kb on - strand, within Shew_0841 at 964.278 kb on + strand, within Shew_0841 at 964.477 kb on + strand at 964.485 kb on - strand at 964.547 kb on + strand, within Shew_0842 at 964.725 kb on + strand, within Shew_0842 at 964.919 kb on - strand, within Shew_0842 at 965.227 kb on - strand at 965.587 kb on + strand, within Shew_0843 at 965.606 kb on + strand, within Shew_0843 at 965.620 kb on + strand, within Shew_0843 at 965.745 kb on + strand, within Shew_0843 at 965.753 kb on + strand, within Shew_0843 at 965.894 kb on + strand, within Shew_0843 at 966.200 kb on - strand, within Shew_0843 at 966.292 kb on + strand, within Shew_0843 at 966.571 kb on - strand, within Shew_0843 at 967.147 kb on - strand at 967.202 kb on + strand at 967.210 kb on - strand at 967.256 kb on - strand, within nrfA at 967.270 kb on + strand, within nrfA at 967.341 kb on - strand, within nrfA at 967.395 kb on + strand, within nrfA at 967.480 kb on - strand, within nrfA at 967.498 kb on + strand, within nrfA at 967.541 kb on - strand, within nrfA at 967.579 kb on - strand, within nrfA at 967.595 kb on + strand, within nrfA at 967.686 kb on + strand, within nrfA at 967.721 kb on + strand, within nrfA at 967.791 kb on + strand, within nrfA
Per-strain Table
Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.075 vol% remove 964,169 - Shew_0841 0.43 -0.6 964,210 - Shew_0841 0.54 -0.1 964,252 - Shew_0841 0.66 -3.2 964,278 + Shew_0841 0.73 +0.0 964,477 + +1.0 964,485 - +1.3 964,547 + Shew_0842 0.12 +1.5 964,725 + Shew_0842 0.40 +2.0 964,919 - Shew_0842 0.71 +2.3 965,227 - +1.3 965,587 + Shew_0843 0.25 +0.9 965,606 + Shew_0843 0.26 +1.3 965,620 + Shew_0843 0.27 +1.4 965,745 + Shew_0843 0.34 +1.9 965,753 + Shew_0843 0.35 +1.6 965,894 + Shew_0843 0.43 +3.2 966,200 - Shew_0843 0.61 +1.3 966,292 + Shew_0843 0.66 +1.7 966,571 - Shew_0843 0.83 +0.8 967,147 - +0.2 967,202 + +1.3 967,210 - -0.4 967,256 - nrfA Shew_0844 0.10 +0.0 967,270 + nrfA Shew_0844 0.11 +0.3 967,341 - nrfA Shew_0844 0.16 +0.5 967,395 + nrfA Shew_0844 0.20 -1.2 967,480 - nrfA Shew_0844 0.26 -1.5 967,498 + nrfA Shew_0844 0.27 +0.1 967,541 - nrfA Shew_0844 0.30 +0.2 967,579 - nrfA Shew_0844 0.33 +0.5 967,595 + nrfA Shew_0844 0.34 -0.1 967,686 + nrfA Shew_0844 0.41 -0.2 967,721 + nrfA Shew_0844 0.43 -2.0 967,791 + nrfA Shew_0844 0.48 +1.1
Or see this region's nucleotide sequence