Strain Fitness in Shewanella loihica PV-4 around Shew_0743

Experiment: Furfuryl Alcohol 0.075 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0741 and Shew_0742 are separated by 141 nucleotidesShew_0742 and Shew_0743 are separated by 164 nucleotidesShew_0743 and Shew_0744 are separated by 103 nucleotidesShew_0744 and Shew_0745 are separated by 183 nucleotidesShew_0745 and Shew_0746 are separated by 25 nucleotides Shew_0741: Shew_0741 - GCN5-related N-acetyltransferase (RefSeq), at 843,511 to 843,954 _0741 Shew_0742: Shew_0742 - hypothetical protein (RefSeq), at 844,096 to 844,401 _0742 Shew_0743: Shew_0743 - sodium:dicarboxylate symporter (RefSeq), at 844,566 to 845,867 _0743 Shew_0744: Shew_0744 - protein of unknown function DUF306, Meta and HslJ (RefSeq), at 845,971 to 846,384 _0744 Shew_0745: Shew_0745 - hypothetical protein (RefSeq), at 846,568 to 846,807 _0745 Shew_0746: Shew_0746 - diguanylate cyclase (RefSeq), at 846,833 to 847,777 _0746 Position (kb) 844 845 846Strain fitness (log2 ratio) -2 -1 0 1 2at 843.716 kb on + strand, within Shew_0741at 843.846 kb on + strand, within Shew_0741at 843.874 kb on - strand, within Shew_0741at 843.998 kb on - strandat 844.056 kb on - strandat 844.432 kb on + strandat 844.447 kb on + strandat 845.145 kb on - strand, within Shew_0743at 845.304 kb on + strand, within Shew_0743at 845.312 kb on - strand, within Shew_0743at 845.324 kb on + strand, within Shew_0743at 845.324 kb on + strand, within Shew_0743at 845.332 kb on - strand, within Shew_0743at 845.332 kb on - strand, within Shew_0743at 845.332 kb on - strand, within Shew_0743at 845.332 kb on - strand, within Shew_0743at 845.372 kb on + strand, within Shew_0743at 845.518 kb on - strand, within Shew_0743at 845.786 kb on + strandat 846.029 kb on + strand, within Shew_0744at 846.254 kb on + strand, within Shew_0744at 846.262 kb on - strand, within Shew_0744at 846.262 kb on - strand, within Shew_0744at 846.262 kb on - strand, within Shew_0744at 846.262 kb on - strand, within Shew_0744at 846.540 kb on + strandat 846.831 kb on + strandat 846.831 kb on + strandat 846.831 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.075 vol%
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843,716 + Shew_0741 0.46 -1.0
843,846 + Shew_0741 0.75 +0.4
843,874 - Shew_0741 0.82 -1.8
843,998 - -0.7
844,056 - +0.7
844,432 + -0.2
844,447 + +0.7
845,145 - Shew_0743 0.44 -0.3
845,304 + Shew_0743 0.57 +0.0
845,312 - Shew_0743 0.57 +1.9
845,324 + Shew_0743 0.58 -0.8
845,324 + Shew_0743 0.58 -0.3
845,332 - Shew_0743 0.59 -2.6
845,332 - Shew_0743 0.59 -0.8
845,332 - Shew_0743 0.59 -1.5
845,332 - Shew_0743 0.59 -0.1
845,372 + Shew_0743 0.62 -0.5
845,518 - Shew_0743 0.73 +0.1
845,786 + -0.0
846,029 + Shew_0744 0.14 -0.1
846,254 + Shew_0744 0.68 +0.1
846,262 - Shew_0744 0.70 -0.8
846,262 - Shew_0744 0.70 +0.1
846,262 - Shew_0744 0.70 +1.5
846,262 - Shew_0744 0.70 -1.5
846,540 + +0.0
846,831 + +0.3
846,831 + +0.3
846,831 + -0.8

Or see this region's nucleotide sequence