Experiment: Furfuryl Alcohol 0.075 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0345 and Shew_0346 overlap by 4 nucleotides Shew_0346 and Shew_0347 are separated by 2 nucleotides Shew_0347 and Shew_0348 are separated by 437 nucleotides
Shew_0345: Shew_0345 - redoxin domain-containing protein (RefSeq), at 393,299 to 393,934
_0345
Shew_0346: Shew_0346 - cytochrome C biogenesis protein (RefSeq), at 393,931 to 394,377
_0346
Shew_0347: Shew_0347 - cytochrome c assembly protein (RefSeq), at 394,380 to 396,371
_0347
Shew_0348: Shew_0348 - cytochrome c, putative (RefSeq), at 396,809 to 398,848
_0348
Position (kb) 394
395
396
397 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 393.453 kb on - strand, within Shew_0345 at 393.486 kb on + strand, within Shew_0345 at 393.789 kb on + strand, within Shew_0345 at 393.896 kb on - strand at 394.129 kb on - strand, within Shew_0346 at 394.217 kb on - strand, within Shew_0346 at 394.224 kb on + strand, within Shew_0346 at 394.224 kb on + strand, within Shew_0346 at 394.224 kb on + strand, within Shew_0346 at 394.232 kb on - strand, within Shew_0346 at 394.618 kb on + strand, within Shew_0347 at 395.452 kb on - strand, within Shew_0347 at 395.510 kb on - strand, within Shew_0347 at 395.691 kb on + strand, within Shew_0347 at 395.694 kb on - strand, within Shew_0347 at 395.751 kb on - strand, within Shew_0347 at 395.776 kb on + strand, within Shew_0347 at 396.023 kb on - strand, within Shew_0347 at 396.040 kb on - strand, within Shew_0347 at 396.055 kb on - strand, within Shew_0347 at 396.170 kb on - strand, within Shew_0347 at 396.180 kb on + strand at 396.227 kb on + strand at 396.234 kb on - strand at 396.260 kb on + strand at 396.275 kb on - strand at 396.290 kb on + strand at 396.356 kb on - strand at 396.392 kb on + strand at 396.416 kb on - strand at 396.416 kb on - strand at 396.420 kb on + strand at 396.420 kb on + strand at 396.828 kb on + strand at 396.831 kb on - strand at 396.855 kb on - strand at 396.890 kb on + strand at 396.898 kb on - strand at 396.961 kb on + strand at 396.961 kb on + strand at 397.074 kb on + strand, within Shew_0348 at 397.153 kb on + strand, within Shew_0348 at 397.153 kb on + strand, within Shew_0348 at 397.163 kb on + strand, within Shew_0348 at 397.163 kb on + strand, within Shew_0348 at 397.171 kb on - strand, within Shew_0348 at 397.171 kb on - strand, within Shew_0348 at 397.367 kb on - strand, within Shew_0348
Per-strain Table
Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.075 vol% remove 393,453 - Shew_0345 0.24 +0.5 393,486 + Shew_0345 0.29 -0.3 393,789 + Shew_0345 0.77 +0.1 393,896 - -0.2 394,129 - Shew_0346 0.44 +0.4 394,217 - Shew_0346 0.64 +0.8 394,224 + Shew_0346 0.66 -0.0 394,224 + Shew_0346 0.66 +0.0 394,224 + Shew_0346 0.66 -0.7 394,232 - Shew_0346 0.67 -0.4 394,618 + Shew_0347 0.12 +0.5 395,452 - Shew_0347 0.54 -1.6 395,510 - Shew_0347 0.57 +0.1 395,691 + Shew_0347 0.66 +1.7 395,694 - Shew_0347 0.66 -0.8 395,751 - Shew_0347 0.69 +0.1 395,776 + Shew_0347 0.70 +1.0 396,023 - Shew_0347 0.82 +0.4 396,040 - Shew_0347 0.83 +0.9 396,055 - Shew_0347 0.84 +0.3 396,170 - Shew_0347 0.90 +0.1 396,180 + -0.4 396,227 + -1.7 396,234 - -1.6 396,260 + -1.7 396,275 - -0.1 396,290 + -0.5 396,356 - +0.6 396,392 + -0.0 396,416 - -2.8 396,416 - -0.1 396,420 + +0.2 396,420 + -0.5 396,828 + +0.5 396,831 - +0.9 396,855 - -0.0 396,890 + +0.2 396,898 - +1.2 396,961 + +0.7 396,961 + -0.4 397,074 + Shew_0348 0.13 -1.1 397,153 + Shew_0348 0.17 -3.4 397,153 + Shew_0348 0.17 +0.9 397,163 + Shew_0348 0.17 +1.7 397,163 + Shew_0348 0.17 -0.1 397,171 - Shew_0348 0.18 +0.5 397,171 - Shew_0348 0.18 +1.0 397,367 - Shew_0348 0.27 -2.0
Or see this region's nucleotide sequence