Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2243

Experiment: D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2242 and Ga0059261_2243 are separated by 89 nucleotidesGa0059261_2243 and Ga0059261_2244 are separated by 97 nucleotides Ga0059261_2242: Ga0059261_2242 - phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 2,342,812 to 2,344,383 _2242 Ga0059261_2243: Ga0059261_2243 - Membrane protein involved in the export of O-antigen and teichoic acid, at 2,344,473 to 2,345,990 _2243 Ga0059261_2244: Ga0059261_2244 - DNA polymerase I (EC 2.7.7.7), at 2,346,088 to 2,348,853 _2244 Position (kb) 2344 2345 2346Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2343.481 kb on + strandat 2344.398 kb on + strandat 2344.398 kb on + strandat 2344.398 kb on + strandat 2344.399 kb on - strandat 2344.399 kb on - strandat 2344.399 kb on - strandat 2344.522 kb on - strandat 2344.558 kb on + strandat 2344.559 kb on - strandat 2344.559 kb on - strandat 2344.786 kb on + strand, within Ga0059261_2243at 2344.787 kb on - strand, within Ga0059261_2243at 2344.836 kb on + strand, within Ga0059261_2243at 2344.897 kb on + strand, within Ga0059261_2243at 2344.898 kb on + strandat 2345.203 kb on + strand, within Ga0059261_2243at 2345.203 kb on + strand, within Ga0059261_2243at 2345.207 kb on - strand, within Ga0059261_2243at 2345.207 kb on - strand, within Ga0059261_2243at 2345.459 kb on - strandat 2345.633 kb on - strand, within Ga0059261_2243at 2345.633 kb on - strand, within Ga0059261_2243at 2345.633 kb on - strand, within Ga0059261_2243at 2346.079 kb on + strandat 2346.079 kb on + strandat 2346.079 kb on + strandat 2346.080 kb on - strandat 2346.080 kb on - strandat 2346.447 kb on + strand, within Ga0059261_2244at 2346.448 kb on - strand, within Ga0059261_2244at 2346.450 kb on - strand, within Ga0059261_2244at 2346.488 kb on + strand, within Ga0059261_2244at 2346.593 kb on + strand, within Ga0059261_2244at 2346.593 kb on + strand, within Ga0059261_2244at 2346.761 kb on + strand, within Ga0059261_2244at 2346.902 kb on + strand, within Ga0059261_2244at 2346.902 kb on + strand, within Ga0059261_2244at 2346.902 kb on + strand, within Ga0059261_2244at 2346.902 kb on + strand, within Ga0059261_2244at 2346.902 kb on + strand, within Ga0059261_2244at 2346.903 kb on - strand, within Ga0059261_2244at 2346.903 kb on - strand, within Ga0059261_2244at 2346.910 kb on - strand, within Ga0059261_2244at 2346.910 kb on - strand, within Ga0059261_2244at 2346.957 kb on + strand, within Ga0059261_2244at 2346.958 kb on - strand, within Ga0059261_2244at 2346.959 kb on + strand, within Ga0059261_2244at 2346.959 kb on + strand, within Ga0059261_2244at 2346.959 kb on + strand, within Ga0059261_2244at 2346.959 kb on + strand, within Ga0059261_2244at 2346.959 kb on + strand, within Ga0059261_2244at 2346.959 kb on + strand, within Ga0059261_2244at 2346.959 kb on + strand, within Ga0059261_2244at 2346.960 kb on - strand, within Ga0059261_2244at 2346.960 kb on - strand, within Ga0059261_2244at 2346.960 kb on - strand, within Ga0059261_2244at 2346.960 kb on - strand, within Ga0059261_2244at 2346.960 kb on - strand, within Ga0059261_2244at 2346.960 kb on - strand, within Ga0059261_2244at 2346.960 kb on - strand, within Ga0059261_2244

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins
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2,343,481 + -1.6
2,344,398 + +2.4
2,344,398 + -0.1
2,344,398 + -0.9
2,344,399 - -0.5
2,344,399 - +0.0
2,344,399 - +0.2
2,344,522 - +2.4
2,344,558 + +2.1
2,344,559 - +2.1
2,344,559 - +3.2
2,344,786 + Ga0059261_2243 0.21 +3.5
2,344,787 - Ga0059261_2243 0.21 +2.2
2,344,836 + Ga0059261_2243 0.24 +3.2
2,344,897 + Ga0059261_2243 0.28 +1.9
2,344,898 + +3.5
2,345,203 + Ga0059261_2243 0.48 +1.6
2,345,203 + Ga0059261_2243 0.48 +3.7
2,345,207 - Ga0059261_2243 0.48 +0.1
2,345,207 - Ga0059261_2243 0.48 +2.9
2,345,459 - +0.9
2,345,633 - Ga0059261_2243 0.76 +2.9
2,345,633 - Ga0059261_2243 0.76 +2.7
2,345,633 - Ga0059261_2243 0.76 +1.9
2,346,079 + +3.5
2,346,079 + +3.5
2,346,079 + +3.0
2,346,080 - +0.9
2,346,080 - +0.3
2,346,447 + Ga0059261_2244 0.13 +0.2
2,346,448 - Ga0059261_2244 0.13 -1.3
2,346,450 - Ga0059261_2244 0.13 -1.0
2,346,488 + Ga0059261_2244 0.14 +0.2
2,346,593 + Ga0059261_2244 0.18 -0.7
2,346,593 + Ga0059261_2244 0.18 +0.4
2,346,761 + Ga0059261_2244 0.24 -0.3
2,346,902 + Ga0059261_2244 0.29 +1.9
2,346,902 + Ga0059261_2244 0.29 +2.0
2,346,902 + Ga0059261_2244 0.29 -1.0
2,346,902 + Ga0059261_2244 0.29 +1.0
2,346,902 + Ga0059261_2244 0.29 -1.0
2,346,903 - Ga0059261_2244 0.29 +1.0
2,346,903 - Ga0059261_2244 0.29 -0.7
2,346,910 - Ga0059261_2244 0.30 -0.4
2,346,910 - Ga0059261_2244 0.30 +0.7
2,346,957 + Ga0059261_2244 0.31 +0.9
2,346,958 - Ga0059261_2244 0.31 -2.5
2,346,959 + Ga0059261_2244 0.31 +2.0
2,346,959 + Ga0059261_2244 0.31 +0.3
2,346,959 + Ga0059261_2244 0.31 +0.2
2,346,959 + Ga0059261_2244 0.31 -0.4
2,346,959 + Ga0059261_2244 0.31 +1.0
2,346,959 + Ga0059261_2244 0.31 +0.5
2,346,959 + Ga0059261_2244 0.31 +0.1
2,346,960 - Ga0059261_2244 0.32 +0.9
2,346,960 - Ga0059261_2244 0.32 +1.2
2,346,960 - Ga0059261_2244 0.32 +1.1
2,346,960 - Ga0059261_2244 0.32 -0.0
2,346,960 - Ga0059261_2244 0.32 +1.2
2,346,960 - Ga0059261_2244 0.32 +0.8
2,346,960 - Ga0059261_2244 0.32 +1.3

Or see this region's nucleotide sequence