Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0838

Experiment: D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0837 and Ga0059261_0838 overlap by 8 nucleotidesGa0059261_0838 and Ga0059261_0839 overlap by 4 nucleotides Ga0059261_0837: Ga0059261_0837 - 3-hydroxyacyl-CoA dehydrogenase, at 875,772 to 877,802 _0837 Ga0059261_0838: Ga0059261_0838 - Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases, at 877,795 to 879,156 _0838 Ga0059261_0839: Ga0059261_0839 - Acyl-CoA dehydrogenases, at 879,153 to 880,334 _0839 Position (kb) 877 878 879 880Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 876.906 kb on + strand, within Ga0059261_0837at 876.906 kb on + strand, within Ga0059261_0837at 876.914 kb on + strand, within Ga0059261_0837at 876.914 kb on + strand, within Ga0059261_0837at 876.914 kb on + strand, within Ga0059261_0837at 876.914 kb on + strand, within Ga0059261_0837at 876.914 kb on + strand, within Ga0059261_0837at 876.914 kb on + strand, within Ga0059261_0837at 876.914 kb on + strand, within Ga0059261_0837at 876.914 kb on + strand, within Ga0059261_0837at 876.914 kb on + strand, within Ga0059261_0837at 876.914 kb on + strand, within Ga0059261_0837at 876.915 kb on - strand, within Ga0059261_0837at 876.915 kb on - strand, within Ga0059261_0837at 876.993 kb on + strand, within Ga0059261_0837at 876.993 kb on + strand, within Ga0059261_0837at 876.993 kb on + strand, within Ga0059261_0837at 876.993 kb on + strand, within Ga0059261_0837at 876.993 kb on + strand, within Ga0059261_0837at 876.994 kb on - strand, within Ga0059261_0837at 876.994 kb on - strand, within Ga0059261_0837at 876.994 kb on - strand, within Ga0059261_0837at 876.994 kb on - strand, within Ga0059261_0837at 877.189 kb on - strand, within Ga0059261_0837at 877.189 kb on - strand, within Ga0059261_0837at 877.379 kb on + strand, within Ga0059261_0837at 877.437 kb on + strand, within Ga0059261_0837at 877.437 kb on + strand, within Ga0059261_0837at 877.437 kb on + strand, within Ga0059261_0837at 877.437 kb on + strand, within Ga0059261_0837at 877.437 kb on + strand, within Ga0059261_0837at 877.437 kb on + strand, within Ga0059261_0837at 877.437 kb on + strand, within Ga0059261_0837at 877.438 kb on - strand, within Ga0059261_0837at 877.438 kb on - strand, within Ga0059261_0837at 877.438 kb on - strand, within Ga0059261_0837at 877.438 kb on - strand, within Ga0059261_0837at 877.443 kb on + strandat 877.444 kb on - strand, within Ga0059261_0837at 877.444 kb on - strand, within Ga0059261_0837at 877.444 kb on - strand, within Ga0059261_0837at 877.566 kb on + strand, within Ga0059261_0837at 877.566 kb on + strand, within Ga0059261_0837at 877.566 kb on + strand, within Ga0059261_0837at 877.566 kb on + strand, within Ga0059261_0837at 877.566 kb on + strand, within Ga0059261_0837at 877.566 kb on + strand, within Ga0059261_0837at 877.567 kb on - strand, within Ga0059261_0837at 877.630 kb on + strandat 877.647 kb on + strandat 877.647 kb on + strandat 877.647 kb on + strandat 877.647 kb on + strandat 877.647 kb on + strandat 877.647 kb on + strandat 877.647 kb on + strandat 877.647 kb on + strandat 877.647 kb on + strandat 877.647 kb on + strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.648 kb on - strandat 877.653 kb on + strandat 877.668 kb on + strandat 878.127 kb on + strand, within Ga0059261_0838at 878.127 kb on + strand, within Ga0059261_0838at 878.128 kb on - strand, within Ga0059261_0838at 878.242 kb on + strandat 878.242 kb on + strand, within Ga0059261_0838at 878.242 kb on + strand, within Ga0059261_0838at 878.242 kb on + strand, within Ga0059261_0838at 878.242 kb on + strand, within Ga0059261_0838at 878.243 kb on - strand, within Ga0059261_0838at 878.243 kb on - strand, within Ga0059261_0838at 878.243 kb on - strand, within Ga0059261_0838at 878.243 kb on - strand, within Ga0059261_0838at 878.413 kb on + strand, within Ga0059261_0838at 878.413 kb on + strand, within Ga0059261_0838at 878.413 kb on + strand, within Ga0059261_0838at 878.414 kb on - strand, within Ga0059261_0838at 878.414 kb on - strand, within Ga0059261_0838at 878.414 kb on - strand, within Ga0059261_0838at 878.414 kb on - strand, within Ga0059261_0838at 878.431 kb on + strand, within Ga0059261_0838at 878.431 kb on + strand, within Ga0059261_0838at 878.431 kb on + strand, within Ga0059261_0838at 878.432 kb on - strand, within Ga0059261_0838at 878.530 kb on - strand, within Ga0059261_0838at 878.541 kb on + strand, within Ga0059261_0838at 878.542 kb on - strand, within Ga0059261_0838at 878.542 kb on - strand, within Ga0059261_0838at 878.591 kb on + strand, within Ga0059261_0838at 878.591 kb on + strand, within Ga0059261_0838at 878.591 kb on + strand, within Ga0059261_0838at 878.591 kb on + strand, within Ga0059261_0838at 878.592 kb on - strand, within Ga0059261_0838at 878.592 kb on - strand, within Ga0059261_0838at 878.592 kb on - strand, within Ga0059261_0838at 878.592 kb on - strand, within Ga0059261_0838at 878.592 kb on - strand, within Ga0059261_0838at 878.592 kb on - strand, within Ga0059261_0838at 878.592 kb on - strand, within Ga0059261_0838at 878.740 kb on + strand, within Ga0059261_0838at 878.740 kb on + strand, within Ga0059261_0838at 878.740 kb on + strand, within Ga0059261_0838at 878.938 kb on + strand, within Ga0059261_0838at 878.939 kb on - strand, within Ga0059261_0838at 878.939 kb on - strand, within Ga0059261_0838at 878.939 kb on - strand, within Ga0059261_0838at 878.939 kb on - strand, within Ga0059261_0838at 878.939 kb on - strand, within Ga0059261_0838at 878.974 kb on - strand, within Ga0059261_0838at 878.980 kb on + strand, within Ga0059261_0838at 878.980 kb on + strand, within Ga0059261_0838at 878.980 kb on + strand, within Ga0059261_0838at 878.980 kb on + strandat 878.980 kb on + strand, within Ga0059261_0838at 878.980 kb on + strand, within Ga0059261_0838at 878.981 kb on - strand, within Ga0059261_0838at 878.981 kb on - strand, within Ga0059261_0838at 878.981 kb on - strand, within Ga0059261_0838at 878.981 kb on - strand, within Ga0059261_0838at 878.981 kb on - strand, within Ga0059261_0838at 878.981 kb on - strand, within Ga0059261_0838at 878.981 kb on - strandat 878.981 kb on - strand, within Ga0059261_0838at 878.981 kb on - strand, within Ga0059261_0838at 879.016 kb on + strand, within Ga0059261_0838at 879.016 kb on + strand, within Ga0059261_0838at 879.017 kb on - strand, within Ga0059261_0838at 879.017 kb on - strand, within Ga0059261_0838at 879.034 kb on - strandat 879.354 kb on + strand, within Ga0059261_0839at 879.355 kb on - strand, within Ga0059261_0839at 879.355 kb on - strand, within Ga0059261_0839at 879.355 kb on - strand, within Ga0059261_0839at 879.355 kb on - strand, within Ga0059261_0839at 879.355 kb on - strand, within Ga0059261_0839at 879.477 kb on + strand, within Ga0059261_0839at 879.477 kb on + strand, within Ga0059261_0839at 879.477 kb on + strand, within Ga0059261_0839at 879.478 kb on - strand, within Ga0059261_0839at 879.478 kb on - strand, within Ga0059261_0839at 879.478 kb on - strand, within Ga0059261_0839at 879.550 kb on - strand, within Ga0059261_0839at 879.605 kb on + strand, within Ga0059261_0839at 879.605 kb on + strand, within Ga0059261_0839at 879.606 kb on - strand, within Ga0059261_0839at 879.618 kb on + strand, within Ga0059261_0839at 879.618 kb on + strand, within Ga0059261_0839at 879.619 kb on - strand, within Ga0059261_0839at 879.619 kb on - strand, within Ga0059261_0839at 879.619 kb on - strand, within Ga0059261_0839at 879.619 kb on - strand, within Ga0059261_0839at 879.619 kb on - strand, within Ga0059261_0839at 879.619 kb on - strand, within Ga0059261_0839at 879.619 kb on - strand, within Ga0059261_0839at 879.651 kb on + strand, within Ga0059261_0839at 879.651 kb on + strand, within Ga0059261_0839at 879.651 kb on + strand, within Ga0059261_0839at 879.651 kb on + strand, within Ga0059261_0839at 879.651 kb on + strand, within Ga0059261_0839at 879.652 kb on - strand, within Ga0059261_0839at 879.652 kb on - strand, within Ga0059261_0839at 879.652 kb on - strand, within Ga0059261_0839at 879.652 kb on - strand, within Ga0059261_0839at 879.652 kb on - strand, within Ga0059261_0839at 879.807 kb on + strand, within Ga0059261_0839at 879.879 kb on + strand, within Ga0059261_0839at 879.879 kb on + strand, within Ga0059261_0839at 879.879 kb on + strand, within Ga0059261_0839at 879.879 kb on + strand, within Ga0059261_0839at 879.880 kb on - strand, within Ga0059261_0839at 879.880 kb on - strand, within Ga0059261_0839at 879.880 kb on - strand, within Ga0059261_0839at 879.880 kb on - strand, within Ga0059261_0839at 880.129 kb on - strand, within Ga0059261_0839at 880.129 kb on - strand, within Ga0059261_0839at 880.129 kb on - strand, within Ga0059261_0839at 880.129 kb on - strand, within Ga0059261_0839at 880.129 kb on - strand, within Ga0059261_0839at 880.129 kb on - strand, within Ga0059261_0839at 880.132 kb on - strand, within Ga0059261_0839at 880.132 kb on - strand, within Ga0059261_0839

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins
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876,906 + Ga0059261_0837 0.56 -0.1
876,906 + Ga0059261_0837 0.56 -1.3
876,914 + Ga0059261_0837 0.56 -2.0
876,914 + Ga0059261_0837 0.56 -0.6
876,914 + Ga0059261_0837 0.56 -0.3
876,914 + Ga0059261_0837 0.56 -0.4
876,914 + Ga0059261_0837 0.56 -0.6
876,914 + Ga0059261_0837 0.56 +0.4
876,914 + Ga0059261_0837 0.56 -1.4
876,914 + Ga0059261_0837 0.56 -0.3
876,914 + Ga0059261_0837 0.56 -0.2
876,914 + Ga0059261_0837 0.56 -0.3
876,915 - Ga0059261_0837 0.56 -0.0
876,915 - Ga0059261_0837 0.56 -1.4
876,993 + Ga0059261_0837 0.60 -1.0
876,993 + Ga0059261_0837 0.60 -0.8
876,993 + Ga0059261_0837 0.60 -0.1
876,993 + Ga0059261_0837 0.60 +0.1
876,993 + Ga0059261_0837 0.60 +1.0
876,994 - Ga0059261_0837 0.60 +1.2
876,994 - Ga0059261_0837 0.60 -0.4
876,994 - Ga0059261_0837 0.60 -0.6
876,994 - Ga0059261_0837 0.60 -0.1
877,189 - Ga0059261_0837 0.70 -0.1
877,189 - Ga0059261_0837 0.70 +0.4
877,379 + Ga0059261_0837 0.79 -4.6
877,437 + Ga0059261_0837 0.82 -1.0
877,437 + Ga0059261_0837 0.82 -1.4
877,437 + Ga0059261_0837 0.82 -0.9
877,437 + Ga0059261_0837 0.82 -1.3
877,437 + Ga0059261_0837 0.82 -2.1
877,437 + Ga0059261_0837 0.82 +0.5
877,437 + Ga0059261_0837 0.82 -0.0
877,438 - Ga0059261_0837 0.82 -1.7
877,438 - Ga0059261_0837 0.82 -0.8
877,438 - Ga0059261_0837 0.82 +0.1
877,438 - Ga0059261_0837 0.82 -0.2
877,443 + -1.7
877,444 - Ga0059261_0837 0.82 -0.9
877,444 - Ga0059261_0837 0.82 -0.5
877,444 - Ga0059261_0837 0.82 -1.9
877,566 + Ga0059261_0837 0.88 -2.8
877,566 + Ga0059261_0837 0.88 +0.2
877,566 + Ga0059261_0837 0.88 +0.3
877,566 + Ga0059261_0837 0.88 -0.1
877,566 + Ga0059261_0837 0.88 +1.0
877,566 + Ga0059261_0837 0.88 +0.2
877,567 - Ga0059261_0837 0.88 -1.3
877,630 + -1.6
877,647 + +0.4
877,647 + -0.7
877,647 + -2.0
877,647 + -2.0
877,647 + -1.1
877,647 + +0.4
877,647 + +0.5
877,647 + -0.9
877,647 + -1.6
877,647 + -2.3
877,648 - -0.9
877,648 - -0.0
877,648 - -0.5
877,648 - +0.0
877,648 - -0.4
877,648 - +0.2
877,648 - -0.4
877,648 - -1.6
877,648 - -1.7
877,648 - +0.0
877,648 - -0.8
877,648 - -0.1
877,648 - -1.9
877,648 - -2.2
877,648 - -1.3
877,653 + -0.2
877,668 + -1.0
878,127 + Ga0059261_0838 0.24 -0.4
878,127 + Ga0059261_0838 0.24 +0.4
878,128 - Ga0059261_0838 0.24 +0.6
878,242 + +0.4
878,242 + Ga0059261_0838 0.33 -0.6
878,242 + Ga0059261_0838 0.33 +0.6
878,242 + Ga0059261_0838 0.33 -0.7
878,242 + Ga0059261_0838 0.33 +0.7
878,243 - Ga0059261_0838 0.33 +0.5
878,243 - Ga0059261_0838 0.33 -2.1
878,243 - Ga0059261_0838 0.33 +0.5
878,243 - Ga0059261_0838 0.33 -0.9
878,413 + Ga0059261_0838 0.45 -0.6
878,413 + Ga0059261_0838 0.45 -1.2
878,413 + Ga0059261_0838 0.45 -2.5
878,414 - Ga0059261_0838 0.45 +0.6
878,414 - Ga0059261_0838 0.45 -1.6
878,414 - Ga0059261_0838 0.45 -1.9
878,414 - Ga0059261_0838 0.45 +0.9
878,431 + Ga0059261_0838 0.47 +0.7
878,431 + Ga0059261_0838 0.47 -0.8
878,431 + Ga0059261_0838 0.47 -1.2
878,432 - Ga0059261_0838 0.47 +1.0
878,530 - Ga0059261_0838 0.54 -1.0
878,541 + Ga0059261_0838 0.55 -1.2
878,542 - Ga0059261_0838 0.55 -0.6
878,542 - Ga0059261_0838 0.55 -0.2
878,591 + Ga0059261_0838 0.58 +0.1
878,591 + Ga0059261_0838 0.58 +0.5
878,591 + Ga0059261_0838 0.58 -0.2
878,591 + Ga0059261_0838 0.58 -0.5
878,592 - Ga0059261_0838 0.59 +0.5
878,592 - Ga0059261_0838 0.59 +1.2
878,592 - Ga0059261_0838 0.59 +0.6
878,592 - Ga0059261_0838 0.59 -0.9
878,592 - Ga0059261_0838 0.59 +0.6
878,592 - Ga0059261_0838 0.59 -0.8
878,592 - Ga0059261_0838 0.59 +0.7
878,740 + Ga0059261_0838 0.69 +0.2
878,740 + Ga0059261_0838 0.69 +0.1
878,740 + Ga0059261_0838 0.69 +2.1
878,938 + Ga0059261_0838 0.84 +0.4
878,939 - Ga0059261_0838 0.84 +0.7
878,939 - Ga0059261_0838 0.84 +0.5
878,939 - Ga0059261_0838 0.84 -0.5
878,939 - Ga0059261_0838 0.84 +0.0
878,939 - Ga0059261_0838 0.84 +0.9
878,974 - Ga0059261_0838 0.87 +1.2
878,980 + Ga0059261_0838 0.87 +0.1
878,980 + Ga0059261_0838 0.87 -0.0
878,980 + Ga0059261_0838 0.87 -0.3
878,980 + +1.1
878,980 + Ga0059261_0838 0.87 -0.4
878,980 + Ga0059261_0838 0.87 +0.7
878,981 - Ga0059261_0838 0.87 +0.4
878,981 - Ga0059261_0838 0.87 +0.2
878,981 - Ga0059261_0838 0.87 -1.7
878,981 - Ga0059261_0838 0.87 -1.0
878,981 - Ga0059261_0838 0.87 -1.0
878,981 - Ga0059261_0838 0.87 +0.2
878,981 - -0.5
878,981 - Ga0059261_0838 0.87 -1.1
878,981 - Ga0059261_0838 0.87 +0.3
879,016 + Ga0059261_0838 0.90 +0.1
879,016 + Ga0059261_0838 0.90 +0.3
879,017 - Ga0059261_0838 0.90 +1.0
879,017 - Ga0059261_0838 0.90 +0.5
879,034 - -2.1
879,354 + Ga0059261_0839 0.17 -0.2
879,355 - Ga0059261_0839 0.17 +1.6
879,355 - Ga0059261_0839 0.17 -0.1
879,355 - Ga0059261_0839 0.17 +0.6
879,355 - Ga0059261_0839 0.17 +0.2
879,355 - Ga0059261_0839 0.17 +1.8
879,477 + Ga0059261_0839 0.27 +0.1
879,477 + Ga0059261_0839 0.27 -0.7
879,477 + Ga0059261_0839 0.27 +0.3
879,478 - Ga0059261_0839 0.27 -0.5
879,478 - Ga0059261_0839 0.27 -0.3
879,478 - Ga0059261_0839 0.27 +1.0
879,550 - Ga0059261_0839 0.34 -0.0
879,605 + Ga0059261_0839 0.38 -0.4
879,605 + Ga0059261_0839 0.38 -0.6
879,606 - Ga0059261_0839 0.38 -0.7
879,618 + Ga0059261_0839 0.39 +0.5
879,618 + Ga0059261_0839 0.39 +0.1
879,619 - Ga0059261_0839 0.39 +0.0
879,619 - Ga0059261_0839 0.39 +0.2
879,619 - Ga0059261_0839 0.39 -0.6
879,619 - Ga0059261_0839 0.39 -0.1
879,619 - Ga0059261_0839 0.39 -0.2
879,619 - Ga0059261_0839 0.39 +0.1
879,619 - Ga0059261_0839 0.39 -0.6
879,651 + Ga0059261_0839 0.42 +0.0
879,651 + Ga0059261_0839 0.42 +0.1
879,651 + Ga0059261_0839 0.42 -0.5
879,651 + Ga0059261_0839 0.42 +0.6
879,651 + Ga0059261_0839 0.42 +0.1
879,652 - Ga0059261_0839 0.42 +0.4
879,652 - Ga0059261_0839 0.42 +0.4
879,652 - Ga0059261_0839 0.42 -0.2
879,652 - Ga0059261_0839 0.42 -0.2
879,652 - Ga0059261_0839 0.42 -1.0
879,807 + Ga0059261_0839 0.55 -0.1
879,879 + Ga0059261_0839 0.61 +0.1
879,879 + Ga0059261_0839 0.61 +0.0
879,879 + Ga0059261_0839 0.61 -0.6
879,879 + Ga0059261_0839 0.61 -1.3
879,880 - Ga0059261_0839 0.62 +0.9
879,880 - Ga0059261_0839 0.62 -0.0
879,880 - Ga0059261_0839 0.62 +0.6
879,880 - Ga0059261_0839 0.62 +0.4
880,129 - Ga0059261_0839 0.83 +2.0
880,129 - Ga0059261_0839 0.83 -0.1
880,129 - Ga0059261_0839 0.83 +0.1
880,129 - Ga0059261_0839 0.83 +0.2
880,129 - Ga0059261_0839 0.83 -0.1
880,129 - Ga0059261_0839 0.83 -0.2
880,132 - Ga0059261_0839 0.83 +0.3
880,132 - Ga0059261_0839 0.83 +0.5

Or see this region's nucleotide sequence