Experiment: D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0820 and Ga0059261_0821 are separated by 214 nucleotides Ga0059261_0821 and Ga0059261_0822 are separated by 2 nucleotides Ga0059261_0822 and Ga0059261_0823 are separated by 4 nucleotides Ga0059261_0823 and Ga0059261_0824 are separated by 94 nucleotides
Ga0059261_0820: Ga0059261_0820 - Holliday junction DNA helicase subunit RuvA, at 862,620 to 863,219
_0820
Ga0059261_0821: Ga0059261_0821 - hypothetical protein, at 863,434 to 863,886
_0821
Ga0059261_0822: Ga0059261_0822 - Holliday junction endonuclease RuvC (EC 3.1.22.4), at 863,889 to 864,374
_0822
Ga0059261_0823: Ga0059261_0823 - hypothetical protein, at 864,379 to 864,885
_0823
Ga0059261_0824: Ga0059261_0824 - DNA-binding regulatory protein, YebC/PmpR family, at 864,980 to 865,723
_0824
Position (kb) 863
864
865 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 862.926 kb on + strand, within Ga0059261_0820 at 863.249 kb on - strand at 863.333 kb on - strand at 863.355 kb on + strand at 863.356 kb on - strand at 863.356 kb on - strand at 863.356 kb on - strand at 863.356 kb on - strand at 863.419 kb on - strand at 863.428 kb on + strand at 863.428 kb on + strand at 863.429 kb on - strand at 863.471 kb on + strand at 863.471 kb on + strand at 863.471 kb on + strand at 863.472 kb on - strand at 863.553 kb on + strand, within Ga0059261_0821 at 863.648 kb on + strand, within Ga0059261_0821 at 863.648 kb on + strand, within Ga0059261_0821 at 863.648 kb on + strand, within Ga0059261_0821 at 863.648 kb on + strand, within Ga0059261_0821 at 863.648 kb on + strand, within Ga0059261_0821 at 863.648 kb on + strand, within Ga0059261_0821 at 863.649 kb on - strand, within Ga0059261_0821 at 863.649 kb on - strand, within Ga0059261_0821 at 863.649 kb on - strand, within Ga0059261_0821 at 863.650 kb on + strand, within Ga0059261_0821 at 863.650 kb on + strand, within Ga0059261_0821 at 863.651 kb on - strand, within Ga0059261_0821 at 863.651 kb on - strand, within Ga0059261_0821 at 863.651 kb on - strand, within Ga0059261_0821 at 863.651 kb on - strand, within Ga0059261_0821 at 863.809 kb on - strand, within Ga0059261_0821 at 863.809 kb on - strand, within Ga0059261_0821 at 863.891 kb on - strand at 864.383 kb on + strand at 864.383 kb on + strand at 864.384 kb on - strand at 864.384 kb on - strand at 864.432 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.566 kb on + strand, within Ga0059261_0823 at 864.567 kb on - strand, within Ga0059261_0823 at 864.567 kb on - strand, within Ga0059261_0823 at 864.567 kb on - strand, within Ga0059261_0823 at 864.567 kb on - strand, within Ga0059261_0823 at 864.567 kb on - strand, within Ga0059261_0823 at 864.567 kb on - strand, within Ga0059261_0823 at 864.567 kb on - strand at 864.567 kb on - strand, within Ga0059261_0823 at 864.567 kb on - strand, within Ga0059261_0823 at 864.567 kb on - strand, within Ga0059261_0823 at 864.567 kb on - strand, within Ga0059261_0823 at 864.567 kb on - strand, within Ga0059261_0823 at 864.567 kb on - strand, within Ga0059261_0823 at 864.572 kb on + strand at 864.572 kb on + strand, within Ga0059261_0823 at 864.572 kb on + strand, within Ga0059261_0823 at 864.572 kb on + strand, within Ga0059261_0823 at 864.573 kb on - strand, within Ga0059261_0823 at 864.698 kb on + strand, within Ga0059261_0823 at 864.698 kb on + strand, within Ga0059261_0823 at 864.699 kb on - strand, within Ga0059261_0823 at 864.699 kb on - strand, within Ga0059261_0823 at 864.764 kb on + strand, within Ga0059261_0823 at 864.765 kb on - strand, within Ga0059261_0823 at 864.765 kb on - strand, within Ga0059261_0823 at 864.765 kb on - strand at 864.765 kb on - strand, within Ga0059261_0823 at 864.765 kb on - strand, within Ga0059261_0823 at 864.765 kb on - strand, within Ga0059261_0823 at 865.018 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins remove 862,926 + Ga0059261_0820 0.51 -1.7 863,249 - +0.1 863,333 - +0.6 863,355 + -0.2 863,356 - -0.8 863,356 - -0.1 863,356 - +1.1 863,356 - +1.1 863,419 - -0.9 863,428 + +0.7 863,428 + -1.6 863,429 - -0.4 863,471 + +0.8 863,471 + -3.0 863,471 + +0.3 863,472 - -2.5 863,553 + Ga0059261_0821 0.26 -2.4 863,648 + Ga0059261_0821 0.47 +1.0 863,648 + Ga0059261_0821 0.47 +0.5 863,648 + Ga0059261_0821 0.47 +0.0 863,648 + Ga0059261_0821 0.47 -1.0 863,648 + Ga0059261_0821 0.47 -1.6 863,648 + Ga0059261_0821 0.47 -0.0 863,649 - Ga0059261_0821 0.47 -2.8 863,649 - Ga0059261_0821 0.47 +0.0 863,649 - Ga0059261_0821 0.47 -1.6 863,650 + Ga0059261_0821 0.48 -0.9 863,650 + Ga0059261_0821 0.48 -1.1 863,651 - Ga0059261_0821 0.48 -0.4 863,651 - Ga0059261_0821 0.48 +1.2 863,651 - Ga0059261_0821 0.48 +1.2 863,651 - Ga0059261_0821 0.48 -0.6 863,809 - Ga0059261_0821 0.83 +0.4 863,809 - Ga0059261_0821 0.83 -0.5 863,891 - +0.2 864,383 + +0.4 864,383 + +0.5 864,384 - +1.4 864,384 - -0.1 864,432 + Ga0059261_0823 0.10 -0.7 864,566 + Ga0059261_0823 0.37 -0.0 864,566 + Ga0059261_0823 0.37 -0.8 864,566 + Ga0059261_0823 0.37 -0.6 864,566 + Ga0059261_0823 0.37 +0.2 864,566 + Ga0059261_0823 0.37 -2.5 864,566 + Ga0059261_0823 0.37 +0.9 864,566 + Ga0059261_0823 0.37 -0.3 864,566 + Ga0059261_0823 0.37 +0.4 864,566 + Ga0059261_0823 0.37 +0.3 864,566 + Ga0059261_0823 0.37 -2.3 864,566 + Ga0059261_0823 0.37 -0.0 864,566 + Ga0059261_0823 0.37 +0.5 864,566 + Ga0059261_0823 0.37 -0.6 864,566 + Ga0059261_0823 0.37 -0.1 864,566 + Ga0059261_0823 0.37 +0.3 864,566 + Ga0059261_0823 0.37 +0.9 864,566 + Ga0059261_0823 0.37 -0.3 864,566 + Ga0059261_0823 0.37 -1.1 864,566 + Ga0059261_0823 0.37 -1.0 864,567 - Ga0059261_0823 0.37 +0.4 864,567 - Ga0059261_0823 0.37 +0.0 864,567 - Ga0059261_0823 0.37 +1.3 864,567 - Ga0059261_0823 0.37 -1.2 864,567 - Ga0059261_0823 0.37 -1.4 864,567 - Ga0059261_0823 0.37 -0.3 864,567 - -1.4 864,567 - Ga0059261_0823 0.37 -0.6 864,567 - Ga0059261_0823 0.37 +0.1 864,567 - Ga0059261_0823 0.37 -0.5 864,567 - Ga0059261_0823 0.37 +0.5 864,567 - Ga0059261_0823 0.37 -1.2 864,567 - Ga0059261_0823 0.37 +1.6 864,572 + +1.1 864,572 + Ga0059261_0823 0.38 +0.6 864,572 + Ga0059261_0823 0.38 +0.1 864,572 + Ga0059261_0823 0.38 +0.3 864,573 - Ga0059261_0823 0.38 -0.5 864,698 + Ga0059261_0823 0.63 -1.4 864,698 + Ga0059261_0823 0.63 -0.6 864,699 - Ga0059261_0823 0.63 +0.5 864,699 - Ga0059261_0823 0.63 +0.1 864,764 + Ga0059261_0823 0.76 -0.4 864,765 - Ga0059261_0823 0.76 -0.5 864,765 - Ga0059261_0823 0.76 +0.5 864,765 - -1.1 864,765 - Ga0059261_0823 0.76 -0.5 864,765 - Ga0059261_0823 0.76 +0.2 864,765 - Ga0059261_0823 0.76 -1.3 865,018 - +2.3
Or see this region's nucleotide sequence