Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0777

Experiment: D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0776 and Ga0059261_0777 are separated by 62 nucleotidesGa0059261_0777 and Ga0059261_0778 overlap by 4 nucleotidesGa0059261_0778 and Ga0059261_0779 are separated by 138 nucleotides Ga0059261_0776: Ga0059261_0776 - Outer membrane receptor proteins, mostly Fe transport, at 808,981 to 811,896 _0776 Ga0059261_0777: Ga0059261_0777 - FecR family protein, at 811,959 to 813,056 _0777 Ga0059261_0778: Ga0059261_0778 - RNA polymerase sigma factor, sigma-70 family, at 813,053 to 813,586 _0778 Ga0059261_0779: Ga0059261_0779 - Lysophospholipase, at 813,725 to 814,618 _0779 Position (kb) 811 812 813 814Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 810.959 kb on + strand, within Ga0059261_0776at 810.959 kb on + strand, within Ga0059261_0776at 810.959 kb on + strand, within Ga0059261_0776at 810.960 kb on - strand, within Ga0059261_0776at 810.960 kb on - strand, within Ga0059261_0776at 810.960 kb on - strand, within Ga0059261_0776at 810.960 kb on - strand, within Ga0059261_0776at 810.960 kb on - strand, within Ga0059261_0776at 811.025 kb on + strand, within Ga0059261_0776at 811.025 kb on + strand, within Ga0059261_0776at 811.025 kb on + strand, within Ga0059261_0776at 811.026 kb on - strand, within Ga0059261_0776at 811.044 kb on - strand, within Ga0059261_0776at 811.044 kb on - strand, within Ga0059261_0776at 811.121 kb on + strand, within Ga0059261_0776at 811.121 kb on + strand, within Ga0059261_0776at 811.121 kb on + strand, within Ga0059261_0776at 811.121 kb on + strand, within Ga0059261_0776at 811.121 kb on + strand, within Ga0059261_0776at 811.122 kb on - strand, within Ga0059261_0776at 811.257 kb on + strand, within Ga0059261_0776at 811.284 kb on + strand, within Ga0059261_0776at 811.661 kb on + strandat 811.661 kb on + strandat 811.661 kb on + strandat 811.662 kb on - strandat 811.662 kb on - strandat 811.662 kb on - strandat 811.797 kb on + strandat 811.878 kb on + strandat 811.878 kb on + strandat 811.879 kb on - strandat 811.879 kb on - strandat 811.879 kb on - strandat 811.879 kb on - strandat 811.890 kb on + strandat 811.890 kb on + strandat 811.891 kb on - strandat 811.891 kb on - strandat 811.891 kb on - strandat 811.891 kb on - strandat 811.891 kb on - strandat 812.161 kb on + strand, within Ga0059261_0777at 812.161 kb on + strand, within Ga0059261_0777at 812.161 kb on + strand, within Ga0059261_0777at 812.215 kb on + strand, within Ga0059261_0777at 812.215 kb on + strand, within Ga0059261_0777at 812.215 kb on + strand, within Ga0059261_0777at 812.216 kb on - strand, within Ga0059261_0777at 812.216 kb on - strand, within Ga0059261_0777at 812.216 kb on - strand, within Ga0059261_0777at 812.216 kb on - strand, within Ga0059261_0777at 812.216 kb on - strand, within Ga0059261_0777at 812.466 kb on - strand, within Ga0059261_0777at 812.545 kb on + strand, within Ga0059261_0777at 812.545 kb on + strand, within Ga0059261_0777at 812.545 kb on + strand, within Ga0059261_0777at 812.546 kb on - strand, within Ga0059261_0777at 812.813 kb on + strand, within Ga0059261_0777at 812.814 kb on - strand, within Ga0059261_0777at 812.814 kb on - strand, within Ga0059261_0777at 812.989 kb on - strandat 812.995 kb on + strandat 812.996 kb on - strandat 813.100 kb on + strandat 813.100 kb on + strandat 813.100 kb on + strandat 813.100 kb on + strandat 813.100 kb on + strandat 813.100 kb on + strandat 813.100 kb on + strandat 813.100 kb on + strandat 813.100 kb on + strandat 813.100 kb on + strandat 813.100 kb on + strandat 813.101 kb on - strandat 813.101 kb on - strandat 813.101 kb on - strandat 813.101 kb on - strandat 813.101 kb on - strandat 813.101 kb on - strandat 813.101 kb on - strandat 813.101 kb on - strandat 813.101 kb on - strandat 813.101 kb on - strandat 813.154 kb on - strand, within Ga0059261_0778at 813.154 kb on - strand, within Ga0059261_0778at 813.254 kb on + strand, within Ga0059261_0778at 813.254 kb on + strand, within Ga0059261_0778at 813.254 kb on + strand, within Ga0059261_0778at 813.255 kb on - strand, within Ga0059261_0778at 813.356 kb on + strandat 813.356 kb on + strand, within Ga0059261_0778at 813.356 kb on + strand, within Ga0059261_0778at 813.356 kb on + strand, within Ga0059261_0778at 813.385 kb on - strand, within Ga0059261_0778at 813.385 kb on - strand, within Ga0059261_0778at 813.385 kb on - strand, within Ga0059261_0778at 813.385 kb on - strand, within Ga0059261_0778at 813.385 kb on - strand, within Ga0059261_0778at 813.385 kb on - strand, within Ga0059261_0778at 813.392 kb on + strand, within Ga0059261_0778at 813.392 kb on + strand, within Ga0059261_0778at 813.495 kb on + strand, within Ga0059261_0778at 813.495 kb on + strand, within Ga0059261_0778at 813.495 kb on + strand, within Ga0059261_0778at 813.496 kb on - strand, within Ga0059261_0778at 813.496 kb on - strand, within Ga0059261_0778at 813.496 kb on - strand, within Ga0059261_0778at 813.496 kb on - strand, within Ga0059261_0778at 813.496 kb on - strand, within Ga0059261_0778at 813.592 kb on + strandat 813.592 kb on + strandat 813.592 kb on + strandat 813.592 kb on + strandat 813.592 kb on + strandat 813.593 kb on - strandat 813.593 kb on - strandat 813.593 kb on - strandat 813.593 kb on - strandat 813.593 kb on - strandat 813.593 kb on - strandat 813.657 kb on + strandat 813.657 kb on + strandat 813.657 kb on + strandat 813.658 kb on - strandat 813.658 kb on - strandat 813.668 kb on + strandat 813.669 kb on - strandat 813.669 kb on - strandat 813.694 kb on + strandat 813.901 kb on + strand, within Ga0059261_0779at 813.901 kb on + strand, within Ga0059261_0779at 813.901 kb on + strand, within Ga0059261_0779at 813.902 kb on - strand, within Ga0059261_0779at 813.902 kb on - strand, within Ga0059261_0779at 813.970 kb on + strand, within Ga0059261_0779at 813.970 kb on + strand, within Ga0059261_0779at 813.970 kb on + strand, within Ga0059261_0779at 813.971 kb on - strand, within Ga0059261_0779at 813.971 kb on - strand, within Ga0059261_0779at 814.022 kb on + strand, within Ga0059261_0779at 814.022 kb on + strand, within Ga0059261_0779at 814.022 kb on + strand, within Ga0059261_0779at 814.022 kb on + strand, within Ga0059261_0779at 814.022 kb on + strand, within Ga0059261_0779at 814.022 kb on + strand, within Ga0059261_0779at 814.023 kb on - strand, within Ga0059261_0779at 814.033 kb on + strand, within Ga0059261_0779at 814.033 kb on + strand, within Ga0059261_0779at 814.033 kb on + strand, within Ga0059261_0779at 814.034 kb on - strand, within Ga0059261_0779at 814.034 kb on - strand, within Ga0059261_0779

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins
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810,959 + Ga0059261_0776 0.68 +2.1
810,959 + Ga0059261_0776 0.68 +0.5
810,959 + Ga0059261_0776 0.68 -3.2
810,960 - Ga0059261_0776 0.68 +0.2
810,960 - Ga0059261_0776 0.68 -1.3
810,960 - Ga0059261_0776 0.68 +0.3
810,960 - Ga0059261_0776 0.68 -0.6
810,960 - Ga0059261_0776 0.68 +0.1
811,025 + Ga0059261_0776 0.70 +0.1
811,025 + Ga0059261_0776 0.70 +1.2
811,025 + Ga0059261_0776 0.70 +1.4
811,026 - Ga0059261_0776 0.70 +0.5
811,044 - Ga0059261_0776 0.71 -0.7
811,044 - Ga0059261_0776 0.71 -0.8
811,121 + Ga0059261_0776 0.73 -1.5
811,121 + Ga0059261_0776 0.73 +0.4
811,121 + Ga0059261_0776 0.73 +0.3
811,121 + Ga0059261_0776 0.73 -0.3
811,121 + Ga0059261_0776 0.73 -0.0
811,122 - Ga0059261_0776 0.73 +0.1
811,257 + Ga0059261_0776 0.78 +0.2
811,284 + Ga0059261_0776 0.79 -0.6
811,661 + +0.6
811,661 + +0.2
811,661 + +1.3
811,662 - +0.4
811,662 - -0.0
811,662 - -1.2
811,797 + +0.5
811,878 + +0.0
811,878 + +0.1
811,879 - +0.1
811,879 - -0.2
811,879 - +0.6
811,879 - -0.3
811,890 + -1.0
811,890 + -0.7
811,891 - +0.2
811,891 - -0.3
811,891 - -0.3
811,891 - -0.2
811,891 - +0.4
812,161 + Ga0059261_0777 0.18 +0.5
812,161 + Ga0059261_0777 0.18 +0.2
812,161 + Ga0059261_0777 0.18 -0.6
812,215 + Ga0059261_0777 0.23 +0.1
812,215 + Ga0059261_0777 0.23 -1.2
812,215 + Ga0059261_0777 0.23 -0.8
812,216 - Ga0059261_0777 0.23 -1.5
812,216 - Ga0059261_0777 0.23 -1.6
812,216 - Ga0059261_0777 0.23 +0.5
812,216 - Ga0059261_0777 0.23 -0.1
812,216 - Ga0059261_0777 0.23 -0.6
812,466 - Ga0059261_0777 0.46 -1.2
812,545 + Ga0059261_0777 0.53 -1.9
812,545 + Ga0059261_0777 0.53 -1.9
812,545 + Ga0059261_0777 0.53 -1.6
812,546 - Ga0059261_0777 0.53 -1.7
812,813 + Ga0059261_0777 0.78 -0.4
812,814 - Ga0059261_0777 0.78 -1.3
812,814 - Ga0059261_0777 0.78 -0.6
812,989 - -1.7
812,995 + -0.6
812,996 - -0.9
813,100 + +1.4
813,100 + -1.0
813,100 + -0.0
813,100 + +0.6
813,100 + +0.1
813,100 + -0.3
813,100 + -0.5
813,100 + +1.2
813,100 + -1.0
813,100 + +0.5
813,100 + +0.3
813,101 - +1.0
813,101 - +0.6
813,101 - -3.1
813,101 - +0.8
813,101 - -1.8
813,101 - +1.4
813,101 - -0.4
813,101 - -1.2
813,101 - -0.7
813,101 - +0.4
813,154 - Ga0059261_0778 0.19 +0.6
813,154 - Ga0059261_0778 0.19 +0.5
813,254 + Ga0059261_0778 0.38 -0.1
813,254 + Ga0059261_0778 0.38 +0.7
813,254 + Ga0059261_0778 0.38 +0.4
813,255 - Ga0059261_0778 0.38 -0.5
813,356 + -1.6
813,356 + Ga0059261_0778 0.57 +0.3
813,356 + Ga0059261_0778 0.57 -0.4
813,356 + Ga0059261_0778 0.57 +0.1
813,385 - Ga0059261_0778 0.62 +0.7
813,385 - Ga0059261_0778 0.62 +1.2
813,385 - Ga0059261_0778 0.62 -0.4
813,385 - Ga0059261_0778 0.62 +0.2
813,385 - Ga0059261_0778 0.62 -1.4
813,385 - Ga0059261_0778 0.62 +1.6
813,392 + Ga0059261_0778 0.63 -1.4
813,392 + Ga0059261_0778 0.63 -0.1
813,495 + Ga0059261_0778 0.83 +0.1
813,495 + Ga0059261_0778 0.83 -0.7
813,495 + Ga0059261_0778 0.83 -0.2
813,496 - Ga0059261_0778 0.83 +0.2
813,496 - Ga0059261_0778 0.83 -0.2
813,496 - Ga0059261_0778 0.83 +0.1
813,496 - Ga0059261_0778 0.83 +1.1
813,496 - Ga0059261_0778 0.83 -0.4
813,592 + +0.9
813,592 + -0.4
813,592 + +0.6
813,592 + +0.9
813,592 + +0.8
813,593 - +0.1
813,593 - -1.2
813,593 - -0.9
813,593 - -0.2
813,593 - -0.1
813,593 - -0.9
813,657 + -1.3
813,657 + -0.7
813,657 + +0.8
813,658 - -0.5
813,658 - +0.1
813,668 + +0.3
813,669 - +0.1
813,669 - +0.3
813,694 + +0.8
813,901 + Ga0059261_0779 0.20 -0.1
813,901 + Ga0059261_0779 0.20 -0.9
813,901 + Ga0059261_0779 0.20 +0.5
813,902 - Ga0059261_0779 0.20 -0.6
813,902 - Ga0059261_0779 0.20 -0.3
813,970 + Ga0059261_0779 0.27 +0.1
813,970 + Ga0059261_0779 0.27 -0.4
813,970 + Ga0059261_0779 0.27 +0.0
813,971 - Ga0059261_0779 0.28 +0.4
813,971 - Ga0059261_0779 0.28 +0.4
814,022 + Ga0059261_0779 0.33 +1.1
814,022 + Ga0059261_0779 0.33 -0.4
814,022 + Ga0059261_0779 0.33 +0.6
814,022 + Ga0059261_0779 0.33 +1.5
814,022 + Ga0059261_0779 0.33 +0.0
814,022 + Ga0059261_0779 0.33 +0.8
814,023 - Ga0059261_0779 0.33 -0.1
814,033 + Ga0059261_0779 0.34 +2.3
814,033 + Ga0059261_0779 0.34 -0.6
814,033 + Ga0059261_0779 0.34 +0.4
814,034 - Ga0059261_0779 0.35 +0.2
814,034 - Ga0059261_0779 0.35 -0.7

Or see this region's nucleotide sequence