Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0537

Experiment: D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0535 and Ga0059261_0536 are separated by 57 nucleotidesGa0059261_0536 and Ga0059261_0537 are separated by 50 nucleotidesGa0059261_0537 and Ga0059261_0538 are separated by 13 nucleotides Ga0059261_0535: Ga0059261_0535 - PAP2 superfamily, at 539,594 to 540,409 _0535 Ga0059261_0536: Ga0059261_0536 - transcriptional regulator, TetR family, at 540,467 to 541,063 _0536 Ga0059261_0537: Ga0059261_0537 - Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit, at 541,114 to 542,295 _0537 Ga0059261_0538: Ga0059261_0538 - Phytoene dehydrogenase and related proteins, at 542,309 to 543,916 _0538 Position (kb) 541 542 543Strain fitness (log2 ratio) -3 -2 -1 0 1at 540.116 kb on + strand, within Ga0059261_0535at 540.116 kb on + strand, within Ga0059261_0535at 540.116 kb on + strand, within Ga0059261_0535at 540.117 kb on - strand, within Ga0059261_0535at 540.117 kb on - strand, within Ga0059261_0535at 540.117 kb on - strand, within Ga0059261_0535at 540.117 kb on - strand, within Ga0059261_0535at 540.117 kb on - strand, within Ga0059261_0535at 540.194 kb on + strand, within Ga0059261_0535at 540.194 kb on + strand, within Ga0059261_0535at 540.194 kb on + strand, within Ga0059261_0535at 540.194 kb on + strand, within Ga0059261_0535at 540.194 kb on + strand, within Ga0059261_0535at 540.195 kb on - strand, within Ga0059261_0535at 540.222 kb on - strand, within Ga0059261_0535at 540.333 kb on - strandat 540.333 kb on - strandat 540.666 kb on + strand, within Ga0059261_0536at 540.666 kb on + strand, within Ga0059261_0536at 540.666 kb on + strand, within Ga0059261_0536at 540.667 kb on - strand, within Ga0059261_0536at 540.667 kb on - strand, within Ga0059261_0536at 540.667 kb on - strand, within Ga0059261_0536at 540.667 kb on - strand, within Ga0059261_0536at 540.667 kb on - strand, within Ga0059261_0536at 540.783 kb on + strand, within Ga0059261_0536at 540.783 kb on + strand, within Ga0059261_0536at 540.783 kb on + strand, within Ga0059261_0536at 540.784 kb on - strand, within Ga0059261_0536at 540.784 kb on - strand, within Ga0059261_0536at 540.784 kb on - strand, within Ga0059261_0536at 540.784 kb on - strand, within Ga0059261_0536at 540.784 kb on - strand, within Ga0059261_0536at 540.784 kb on - strand, within Ga0059261_0536at 540.784 kb on - strand, within Ga0059261_0536at 540.824 kb on + strand, within Ga0059261_0536at 540.870 kb on + strand, within Ga0059261_0536at 540.871 kb on - strand, within Ga0059261_0536at 540.871 kb on - strand, within Ga0059261_0536at 540.871 kb on - strand, within Ga0059261_0536at 540.871 kb on - strand, within Ga0059261_0536at 541.186 kb on + strandat 541.186 kb on + strandat 541.187 kb on - strandat 541.187 kb on - strandat 541.187 kb on - strandat 541.432 kb on + strand, within Ga0059261_0537at 541.433 kb on - strand, within Ga0059261_0537at 541.447 kb on + strand, within Ga0059261_0537at 541.447 kb on + strand, within Ga0059261_0537at 541.447 kb on + strand, within Ga0059261_0537at 541.447 kb on + strand, within Ga0059261_0537at 541.448 kb on - strand, within Ga0059261_0537at 541.448 kb on - strand, within Ga0059261_0537at 541.493 kb on - strand, within Ga0059261_0537at 541.493 kb on - strand, within Ga0059261_0537at 541.616 kb on - strand, within Ga0059261_0537at 541.616 kb on - strand, within Ga0059261_0537at 541.718 kb on - strand, within Ga0059261_0537at 541.718 kb on - strand, within Ga0059261_0537at 541.780 kb on + strand, within Ga0059261_0537at 541.780 kb on + strand, within Ga0059261_0537at 541.822 kb on + strand, within Ga0059261_0537at 541.822 kb on + strand, within Ga0059261_0537at 541.864 kb on + strand, within Ga0059261_0537at 541.865 kb on - strand, within Ga0059261_0537at 541.865 kb on - strand, within Ga0059261_0537at 541.924 kb on + strand, within Ga0059261_0537at 541.924 kb on + strand, within Ga0059261_0537at 541.924 kb on + strand, within Ga0059261_0537at 541.924 kb on + strand, within Ga0059261_0537at 541.924 kb on + strand, within Ga0059261_0537at 541.927 kb on + strand, within Ga0059261_0537at 541.928 kb on - strand, within Ga0059261_0537at 541.928 kb on - strand, within Ga0059261_0537at 541.960 kb on + strand, within Ga0059261_0537at 541.960 kb on + strand, within Ga0059261_0537at 541.960 kb on + strand, within Ga0059261_0537at 541.960 kb on + strand, within Ga0059261_0537at 541.960 kb on + strand, within Ga0059261_0537at 541.960 kb on + strand, within Ga0059261_0537at 541.960 kb on + strand, within Ga0059261_0537at 541.960 kb on + strand, within Ga0059261_0537at 541.961 kb on - strand, within Ga0059261_0537at 541.961 kb on - strand, within Ga0059261_0537at 541.961 kb on - strand, within Ga0059261_0537at 541.961 kb on - strand, within Ga0059261_0537at 541.961 kb on - strand, within Ga0059261_0537at 541.961 kb on - strand, within Ga0059261_0537at 541.961 kb on - strand, within Ga0059261_0537at 541.961 kb on - strand, within Ga0059261_0537at 541.961 kb on - strand, within Ga0059261_0537at 542.074 kb on + strand, within Ga0059261_0537at 542.161 kb on + strand, within Ga0059261_0537at 542.161 kb on + strand, within Ga0059261_0537at 542.161 kb on + strand, within Ga0059261_0537at 542.161 kb on + strand, within Ga0059261_0537at 542.161 kb on + strand, within Ga0059261_0537at 542.162 kb on - strand, within Ga0059261_0537at 542.162 kb on - strand, within Ga0059261_0537at 542.162 kb on - strand, within Ga0059261_0537at 542.286 kb on + strandat 542.287 kb on - strandat 542.287 kb on - strandat 542.318 kb on + strandat 542.318 kb on + strandat 542.318 kb on + strandat 542.318 kb on + strandat 542.319 kb on - strandat 542.319 kb on - strandat 542.319 kb on - strandat 542.319 kb on - strandat 542.319 kb on - strandat 542.355 kb on + strandat 542.355 kb on + strandat 542.355 kb on + strandat 542.355 kb on + strandat 542.356 kb on - strandat 542.369 kb on + strandat 542.369 kb on + strandat 542.370 kb on - strandat 542.370 kb on - strandat 542.370 kb on - strandat 542.370 kb on - strandat 542.370 kb on - strandat 542.370 kb on - strandat 542.480 kb on + strand, within Ga0059261_0538at 542.480 kb on + strand, within Ga0059261_0538at 542.480 kb on + strand, within Ga0059261_0538at 542.481 kb on - strand, within Ga0059261_0538at 542.481 kb on - strand, within Ga0059261_0538at 542.591 kb on + strand, within Ga0059261_0538at 542.591 kb on + strand, within Ga0059261_0538at 542.591 kb on + strand, within Ga0059261_0538at 542.591 kb on + strand, within Ga0059261_0538at 542.592 kb on - strand, within Ga0059261_0538at 542.675 kb on + strand, within Ga0059261_0538at 542.676 kb on - strand, within Ga0059261_0538at 542.808 kb on + strand, within Ga0059261_0538at 542.808 kb on + strand, within Ga0059261_0538at 542.809 kb on - strand, within Ga0059261_0538at 542.873 kb on + strand, within Ga0059261_0538at 542.874 kb on - strand, within Ga0059261_0538at 542.885 kb on + strand, within Ga0059261_0538at 542.885 kb on + strand, within Ga0059261_0538at 542.885 kb on + strand, within Ga0059261_0538at 542.885 kb on + strand, within Ga0059261_0538at 542.927 kb on + strand, within Ga0059261_0538at 542.927 kb on + strand, within Ga0059261_0538at 542.928 kb on - strand, within Ga0059261_0538at 542.928 kb on - strand, within Ga0059261_0538at 542.928 kb on - strand, within Ga0059261_0538at 542.928 kb on - strand, within Ga0059261_0538at 542.928 kb on - strand, within Ga0059261_0538at 542.957 kb on + strand, within Ga0059261_0538at 542.957 kb on + strand, within Ga0059261_0538at 542.957 kb on + strand, within Ga0059261_0538at 542.957 kb on + strand, within Ga0059261_0538at 542.957 kb on + strand, within Ga0059261_0538at 542.957 kb on + strand, within Ga0059261_0538at 542.958 kb on - strand, within Ga0059261_0538at 542.958 kb on - strand, within Ga0059261_0538at 542.958 kb on - strand, within Ga0059261_0538at 542.958 kb on - strand, within Ga0059261_0538at 542.958 kb on - strand, within Ga0059261_0538at 542.958 kb on - strand, within Ga0059261_0538at 542.958 kb on - strand, within Ga0059261_0538at 542.958 kb on - strand, within Ga0059261_0538at 542.958 kb on - strand, within Ga0059261_0538at 543.016 kb on + strand, within Ga0059261_0538at 543.016 kb on + strand, within Ga0059261_0538at 543.016 kb on + strand, within Ga0059261_0538at 543.017 kb on - strand, within Ga0059261_0538at 543.017 kb on - strand, within Ga0059261_0538at 543.017 kb on - strand, within Ga0059261_0538at 543.047 kb on + strand, within Ga0059261_0538at 543.047 kb on + strand, within Ga0059261_0538at 543.048 kb on - strand, within Ga0059261_0538at 543.048 kb on - strand, within Ga0059261_0538at 543.048 kb on - strand, within Ga0059261_0538at 543.048 kb on - strand, within Ga0059261_0538at 543.048 kb on - strand, within Ga0059261_0538at 543.209 kb on + strandat 543.269 kb on + strand, within Ga0059261_0538at 543.269 kb on + strand, within Ga0059261_0538at 543.269 kb on + strand, within Ga0059261_0538at 543.269 kb on + strand, within Ga0059261_0538at 543.269 kb on + strand, within Ga0059261_0538at 543.270 kb on - strand, within Ga0059261_0538at 543.270 kb on - strand, within Ga0059261_0538

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins
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540,116 + Ga0059261_0535 0.64 -0.5
540,116 + Ga0059261_0535 0.64 -2.3
540,116 + Ga0059261_0535 0.64 +0.5
540,117 - Ga0059261_0535 0.64 -0.1
540,117 - Ga0059261_0535 0.64 -1.0
540,117 - Ga0059261_0535 0.64 +0.7
540,117 - Ga0059261_0535 0.64 +0.7
540,117 - Ga0059261_0535 0.64 -0.0
540,194 + Ga0059261_0535 0.74 -0.3
540,194 + Ga0059261_0535 0.74 +0.5
540,194 + Ga0059261_0535 0.74 -0.9
540,194 + Ga0059261_0535 0.74 -1.0
540,194 + Ga0059261_0535 0.74 +0.5
540,195 - Ga0059261_0535 0.74 -1.3
540,222 - Ga0059261_0535 0.77 +0.4
540,333 - +0.3
540,333 - -0.9
540,666 + Ga0059261_0536 0.33 +0.0
540,666 + Ga0059261_0536 0.33 -1.8
540,666 + Ga0059261_0536 0.33 -1.4
540,667 - Ga0059261_0536 0.34 +0.8
540,667 - Ga0059261_0536 0.34 +0.6
540,667 - Ga0059261_0536 0.34 -1.1
540,667 - Ga0059261_0536 0.34 -0.7
540,667 - Ga0059261_0536 0.34 -1.6
540,783 + Ga0059261_0536 0.53 +0.3
540,783 + Ga0059261_0536 0.53 -0.9
540,783 + Ga0059261_0536 0.53 +0.0
540,784 - Ga0059261_0536 0.53 +0.4
540,784 - Ga0059261_0536 0.53 -0.8
540,784 - Ga0059261_0536 0.53 -0.6
540,784 - Ga0059261_0536 0.53 -0.5
540,784 - Ga0059261_0536 0.53 -1.0
540,784 - Ga0059261_0536 0.53 +0.2
540,784 - Ga0059261_0536 0.53 -0.2
540,824 + Ga0059261_0536 0.60 -0.3
540,870 + Ga0059261_0536 0.68 +0.4
540,871 - Ga0059261_0536 0.68 +0.1
540,871 - Ga0059261_0536 0.68 +1.0
540,871 - Ga0059261_0536 0.68 -0.2
540,871 - Ga0059261_0536 0.68 -3.1
541,186 + -0.2
541,186 + +1.0
541,187 - -0.2
541,187 - +0.8
541,187 - -0.3
541,432 + Ga0059261_0537 0.27 -0.3
541,433 - Ga0059261_0537 0.27 -1.4
541,447 + Ga0059261_0537 0.28 +0.0
541,447 + Ga0059261_0537 0.28 +0.8
541,447 + Ga0059261_0537 0.28 -0.4
541,447 + Ga0059261_0537 0.28 -0.2
541,448 - Ga0059261_0537 0.28 +0.2
541,448 - Ga0059261_0537 0.28 +0.4
541,493 - Ga0059261_0537 0.32 +0.0
541,493 - Ga0059261_0537 0.32 -0.0
541,616 - Ga0059261_0537 0.42 -0.5
541,616 - Ga0059261_0537 0.42 -0.5
541,718 - Ga0059261_0537 0.51 -0.4
541,718 - Ga0059261_0537 0.51 -2.9
541,780 + Ga0059261_0537 0.56 +0.3
541,780 + Ga0059261_0537 0.56 +0.4
541,822 + Ga0059261_0537 0.60 -0.3
541,822 + Ga0059261_0537 0.60 -0.5
541,864 + Ga0059261_0537 0.63 +0.1
541,865 - Ga0059261_0537 0.64 +0.3
541,865 - Ga0059261_0537 0.64 +0.4
541,924 + Ga0059261_0537 0.69 +0.5
541,924 + Ga0059261_0537 0.69 +0.2
541,924 + Ga0059261_0537 0.69 -1.0
541,924 + Ga0059261_0537 0.69 -0.2
541,924 + Ga0059261_0537 0.69 -0.3
541,927 + Ga0059261_0537 0.69 -1.0
541,928 - Ga0059261_0537 0.69 -0.5
541,928 - Ga0059261_0537 0.69 -0.8
541,960 + Ga0059261_0537 0.72 +0.4
541,960 + Ga0059261_0537 0.72 -0.3
541,960 + Ga0059261_0537 0.72 +0.4
541,960 + Ga0059261_0537 0.72 -0.2
541,960 + Ga0059261_0537 0.72 -0.4
541,960 + Ga0059261_0537 0.72 -1.4
541,960 + Ga0059261_0537 0.72 -2.0
541,960 + Ga0059261_0537 0.72 -0.0
541,961 - Ga0059261_0537 0.72 +0.7
541,961 - Ga0059261_0537 0.72 -0.2
541,961 - Ga0059261_0537 0.72 -0.3
541,961 - Ga0059261_0537 0.72 -0.0
541,961 - Ga0059261_0537 0.72 -0.1
541,961 - Ga0059261_0537 0.72 +0.9
541,961 - Ga0059261_0537 0.72 +0.2
541,961 - Ga0059261_0537 0.72 -0.1
541,961 - Ga0059261_0537 0.72 +1.2
542,074 + Ga0059261_0537 0.81 +0.3
542,161 + Ga0059261_0537 0.89 +0.3
542,161 + Ga0059261_0537 0.89 +0.2
542,161 + Ga0059261_0537 0.89 -1.2
542,161 + Ga0059261_0537 0.89 -0.6
542,161 + Ga0059261_0537 0.89 +0.5
542,162 - Ga0059261_0537 0.89 -2.1
542,162 - Ga0059261_0537 0.89 +0.2
542,162 - Ga0059261_0537 0.89 -0.4
542,286 + -0.1
542,287 - -0.5
542,287 - -0.0
542,318 + -0.6
542,318 + -0.3
542,318 + -0.3
542,318 + -0.7
542,319 - +0.1
542,319 - +0.6
542,319 - +0.5
542,319 - -0.3
542,319 - -0.9
542,355 + -0.4
542,355 + +1.0
542,355 + +1.2
542,355 + +1.3
542,356 - -0.3
542,369 + +0.1
542,369 + -0.3
542,370 - +0.1
542,370 - +1.3
542,370 - -0.5
542,370 - -0.4
542,370 - -1.2
542,370 - -0.2
542,480 + Ga0059261_0538 0.11 +1.0
542,480 + Ga0059261_0538 0.11 +1.2
542,480 + Ga0059261_0538 0.11 +0.4
542,481 - Ga0059261_0538 0.11 -0.7
542,481 - Ga0059261_0538 0.11 +0.5
542,591 + Ga0059261_0538 0.18 +0.2
542,591 + Ga0059261_0538 0.18 -0.2
542,591 + Ga0059261_0538 0.18 -0.3
542,591 + Ga0059261_0538 0.18 -0.1
542,592 - Ga0059261_0538 0.18 +0.2
542,675 + Ga0059261_0538 0.23 +0.0
542,676 - Ga0059261_0538 0.23 -0.1
542,808 + Ga0059261_0538 0.31 +0.7
542,808 + Ga0059261_0538 0.31 +0.9
542,809 - Ga0059261_0538 0.31 -0.3
542,873 + Ga0059261_0538 0.35 +0.2
542,874 - Ga0059261_0538 0.35 -0.0
542,885 + Ga0059261_0538 0.36 +0.3
542,885 + Ga0059261_0538 0.36 -1.0
542,885 + Ga0059261_0538 0.36 -0.1
542,885 + Ga0059261_0538 0.36 -0.3
542,927 + Ga0059261_0538 0.38 -1.0
542,927 + Ga0059261_0538 0.38 -0.5
542,928 - Ga0059261_0538 0.38 -1.7
542,928 - Ga0059261_0538 0.38 +0.5
542,928 - Ga0059261_0538 0.38 -0.5
542,928 - Ga0059261_0538 0.38 -2.7
542,928 - Ga0059261_0538 0.38 -0.3
542,957 + Ga0059261_0538 0.40 -1.0
542,957 + Ga0059261_0538 0.40 -0.2
542,957 + Ga0059261_0538 0.40 -0.5
542,957 + Ga0059261_0538 0.40 -0.2
542,957 + Ga0059261_0538 0.40 +0.0
542,957 + Ga0059261_0538 0.40 -0.1
542,958 - Ga0059261_0538 0.40 -0.3
542,958 - Ga0059261_0538 0.40 +0.1
542,958 - Ga0059261_0538 0.40 -0.0
542,958 - Ga0059261_0538 0.40 +0.2
542,958 - Ga0059261_0538 0.40 -0.5
542,958 - Ga0059261_0538 0.40 -1.4
542,958 - Ga0059261_0538 0.40 -0.3
542,958 - Ga0059261_0538 0.40 -1.7
542,958 - Ga0059261_0538 0.40 +0.3
543,016 + Ga0059261_0538 0.44 -0.7
543,016 + Ga0059261_0538 0.44 -2.2
543,016 + Ga0059261_0538 0.44 +0.7
543,017 - Ga0059261_0538 0.44 +0.5
543,017 - Ga0059261_0538 0.44 -0.0
543,017 - Ga0059261_0538 0.44 -0.4
543,047 + Ga0059261_0538 0.46 +0.2
543,047 + Ga0059261_0538 0.46 -0.1
543,048 - Ga0059261_0538 0.46 +1.1
543,048 - Ga0059261_0538 0.46 +1.4
543,048 - Ga0059261_0538 0.46 -2.0
543,048 - Ga0059261_0538 0.46 -1.5
543,048 - Ga0059261_0538 0.46 -0.2
543,209 + -2.4
543,269 + Ga0059261_0538 0.60 +0.6
543,269 + Ga0059261_0538 0.60 +0.4
543,269 + Ga0059261_0538 0.60 +0.3
543,269 + Ga0059261_0538 0.60 -1.4
543,269 + Ga0059261_0538 0.60 -2.5
543,270 - Ga0059261_0538 0.60 +0.3
543,270 - Ga0059261_0538 0.60 -0.2

Or see this region's nucleotide sequence