Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0054

Experiment: D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0052 and Ga0059261_0053 are separated by 63 nucleotidesGa0059261_0053 and Ga0059261_0054 overlap by 16 nucleotidesGa0059261_0054 and Ga0059261_0055 are separated by 155 nucleotides Ga0059261_0052: Ga0059261_0052 - hypothetical protein, at 46,031 to 46,810 _0052 Ga0059261_0053: Ga0059261_0053 - Protein of unknown function (DUF4230), at 46,874 to 47,611 _0053 Ga0059261_0054: Ga0059261_0054 - Zn-dependent hydrolases, including glyoxylases, at 47,596 to 48,453 _0054 Ga0059261_0055: Ga0059261_0055 - Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component, at 48,609 to 50,321 _0055 Position (kb) 47 48 49Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 46.617 kb on + strand, within Ga0059261_0052at 46.617 kb on + strand, within Ga0059261_0052at 46.617 kb on + strand, within Ga0059261_0052at 46.618 kb on - strand, within Ga0059261_0052at 46.618 kb on - strand, within Ga0059261_0052at 46.618 kb on - strand, within Ga0059261_0052at 46.618 kb on - strand, within Ga0059261_0052at 46.618 kb on - strand, within Ga0059261_0052at 46.618 kb on - strand, within Ga0059261_0052at 46.618 kb on - strand, within Ga0059261_0052at 46.618 kb on - strand, within Ga0059261_0052at 46.618 kb on - strand, within Ga0059261_0052at 46.662 kb on + strand, within Ga0059261_0052at 46.662 kb on + strand, within Ga0059261_0052at 46.662 kb on + strand, within Ga0059261_0052at 46.662 kb on + strand, within Ga0059261_0052at 46.662 kb on + strand, within Ga0059261_0052at 46.662 kb on + strandat 46.662 kb on + strand, within Ga0059261_0052at 46.662 kb on + strand, within Ga0059261_0052at 46.662 kb on + strand, within Ga0059261_0052at 46.663 kb on - strand, within Ga0059261_0052at 46.663 kb on - strand, within Ga0059261_0052at 46.663 kb on - strand, within Ga0059261_0052at 46.663 kb on - strand, within Ga0059261_0052at 46.663 kb on - strand, within Ga0059261_0052at 46.703 kb on + strand, within Ga0059261_0052at 46.704 kb on - strand, within Ga0059261_0052at 46.797 kb on + strandat 46.797 kb on + strandat 46.797 kb on + strandat 46.798 kb on - strandat 46.798 kb on - strandat 46.798 kb on - strandat 46.846 kb on + strandat 46.846 kb on + strandat 46.847 kb on - strandat 46.847 kb on - strandat 46.847 kb on - strandat 46.847 kb on - strandat 46.875 kb on + strandat 46.875 kb on + strandat 46.875 kb on + strandat 46.876 kb on - strandat 46.876 kb on - strandat 46.876 kb on - strandat 46.876 kb on - strandat 46.876 kb on - strandat 46.932 kb on - strandat 47.074 kb on + strand, within Ga0059261_0053at 47.075 kb on - strand, within Ga0059261_0053at 47.075 kb on - strand, within Ga0059261_0053at 47.210 kb on - strand, within Ga0059261_0053at 47.314 kb on - strand, within Ga0059261_0053at 47.325 kb on + strand, within Ga0059261_0053at 47.325 kb on + strand, within Ga0059261_0053at 47.354 kb on + strand, within Ga0059261_0053at 47.355 kb on - strand, within Ga0059261_0053at 47.355 kb on - strand, within Ga0059261_0053at 47.355 kb on - strand, within Ga0059261_0053at 47.355 kb on - strand, within Ga0059261_0053at 47.511 kb on + strand, within Ga0059261_0053at 47.717 kb on + strand, within Ga0059261_0054at 47.717 kb on + strand, within Ga0059261_0054at 47.717 kb on + strand, within Ga0059261_0054at 47.717 kb on + strandat 47.717 kb on + strand, within Ga0059261_0054at 47.717 kb on + strand, within Ga0059261_0054at 47.717 kb on + strand, within Ga0059261_0054at 47.717 kb on + strand, within Ga0059261_0054at 47.718 kb on - strand, within Ga0059261_0054at 47.718 kb on - strand, within Ga0059261_0054at 47.718 kb on - strand, within Ga0059261_0054at 47.718 kb on - strand, within Ga0059261_0054at 47.718 kb on - strandat 47.718 kb on - strand, within Ga0059261_0054at 47.718 kb on - strand, within Ga0059261_0054at 47.718 kb on - strand, within Ga0059261_0054at 47.718 kb on - strand, within Ga0059261_0054at 47.718 kb on - strand, within Ga0059261_0054at 47.773 kb on + strand, within Ga0059261_0054at 47.773 kb on + strand, within Ga0059261_0054at 47.773 kb on + strand, within Ga0059261_0054at 47.773 kb on + strand, within Ga0059261_0054at 47.774 kb on - strand, within Ga0059261_0054at 47.858 kb on + strand, within Ga0059261_0054at 47.859 kb on - strand, within Ga0059261_0054at 47.861 kb on + strand, within Ga0059261_0054at 47.861 kb on + strand, within Ga0059261_0054at 47.861 kb on + strandat 47.861 kb on + strand, within Ga0059261_0054at 47.861 kb on + strand, within Ga0059261_0054at 47.861 kb on + strand, within Ga0059261_0054at 47.861 kb on + strand, within Ga0059261_0054at 47.862 kb on - strand, within Ga0059261_0054at 47.862 kb on - strand, within Ga0059261_0054at 47.862 kb on - strand, within Ga0059261_0054at 47.862 kb on - strand, within Ga0059261_0054at 47.862 kb on - strand, within Ga0059261_0054at 47.862 kb on - strand, within Ga0059261_0054at 47.862 kb on - strand, within Ga0059261_0054at 47.862 kb on - strand, within Ga0059261_0054at 47.862 kb on - strand, within Ga0059261_0054at 47.904 kb on + strand, within Ga0059261_0054at 47.904 kb on + strand, within Ga0059261_0054at 47.904 kb on + strand, within Ga0059261_0054at 47.905 kb on - strand, within Ga0059261_0054at 47.905 kb on - strand, within Ga0059261_0054at 47.905 kb on - strandat 47.905 kb on - strand, within Ga0059261_0054at 47.905 kb on - strand, within Ga0059261_0054at 47.905 kb on - strand, within Ga0059261_0054at 47.906 kb on + strand, within Ga0059261_0054at 47.906 kb on + strand, within Ga0059261_0054at 47.906 kb on + strand, within Ga0059261_0054at 47.906 kb on + strand, within Ga0059261_0054at 47.906 kb on + strand, within Ga0059261_0054at 47.906 kb on + strand, within Ga0059261_0054at 47.906 kb on + strand, within Ga0059261_0054at 47.906 kb on + strand, within Ga0059261_0054at 47.906 kb on + strand, within Ga0059261_0054at 47.906 kb on + strand, within Ga0059261_0054at 47.907 kb on - strand, within Ga0059261_0054at 47.907 kb on - strand, within Ga0059261_0054at 47.907 kb on - strand, within Ga0059261_0054at 47.907 kb on - strand, within Ga0059261_0054at 47.907 kb on - strand, within Ga0059261_0054at 47.907 kb on - strand, within Ga0059261_0054at 47.907 kb on - strand, within Ga0059261_0054at 48.021 kb on + strand, within Ga0059261_0054at 48.021 kb on + strand, within Ga0059261_0054at 48.022 kb on - strand, within Ga0059261_0054at 48.022 kb on - strand, within Ga0059261_0054at 48.045 kb on + strand, within Ga0059261_0054at 48.045 kb on + strand, within Ga0059261_0054at 48.046 kb on - strand, within Ga0059261_0054at 48.104 kb on + strand, within Ga0059261_0054at 48.104 kb on + strand, within Ga0059261_0054at 48.104 kb on + strand, within Ga0059261_0054at 48.105 kb on - strand, within Ga0059261_0054at 48.105 kb on - strand, within Ga0059261_0054at 48.105 kb on - strand, within Ga0059261_0054at 48.105 kb on - strand, within Ga0059261_0054at 48.105 kb on - strand, within Ga0059261_0054at 48.350 kb on + strand, within Ga0059261_0054at 48.350 kb on + strand, within Ga0059261_0054at 48.350 kb on + strand, within Ga0059261_0054at 48.350 kb on + strand, within Ga0059261_0054at 48.350 kb on + strand, within Ga0059261_0054at 48.368 kb on + strandat 48.368 kb on + strandat 48.368 kb on + strandat 48.368 kb on + strandat 48.368 kb on + strandat 48.369 kb on - strandat 48.453 kb on + strandat 48.454 kb on - strandat 48.454 kb on - strandat 48.965 kb on + strandat 48.966 kb on - strand, within Ga0059261_0055at 48.966 kb on - strand, within Ga0059261_0055

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins
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46,617 + Ga0059261_0052 0.75 -0.0
46,617 + Ga0059261_0052 0.75 +1.5
46,617 + Ga0059261_0052 0.75 +0.3
46,618 - Ga0059261_0052 0.75 -0.0
46,618 - Ga0059261_0052 0.75 +0.6
46,618 - Ga0059261_0052 0.75 -1.7
46,618 - Ga0059261_0052 0.75 +0.6
46,618 - Ga0059261_0052 0.75 -0.1
46,618 - Ga0059261_0052 0.75 -1.0
46,618 - Ga0059261_0052 0.75 -0.8
46,618 - Ga0059261_0052 0.75 +0.1
46,618 - Ga0059261_0052 0.75 +0.3
46,662 + Ga0059261_0052 0.81 -0.2
46,662 + Ga0059261_0052 0.81 +1.5
46,662 + Ga0059261_0052 0.81 +0.3
46,662 + Ga0059261_0052 0.81 +0.2
46,662 + Ga0059261_0052 0.81 -0.2
46,662 + -1.3
46,662 + Ga0059261_0052 0.81 +0.8
46,662 + Ga0059261_0052 0.81 -0.2
46,662 + Ga0059261_0052 0.81 +0.1
46,663 - Ga0059261_0052 0.81 +0.4
46,663 - Ga0059261_0052 0.81 -0.1
46,663 - Ga0059261_0052 0.81 -0.8
46,663 - Ga0059261_0052 0.81 +0.4
46,663 - Ga0059261_0052 0.81 -2.3
46,703 + Ga0059261_0052 0.86 +1.4
46,704 - Ga0059261_0052 0.86 -0.1
46,797 + +0.3
46,797 + +0.5
46,797 + +0.8
46,798 - -0.9
46,798 - +0.6
46,798 - +0.7
46,846 + +0.8
46,846 + +0.0
46,847 - +0.2
46,847 - +0.8
46,847 - -1.6
46,847 - -0.0
46,875 + +1.2
46,875 + +0.3
46,875 + -0.7
46,876 - +0.8
46,876 - +0.9
46,876 - -0.4
46,876 - +0.1
46,876 - +0.8
46,932 - -0.4
47,074 + Ga0059261_0053 0.27 -0.5
47,075 - Ga0059261_0053 0.27 -4.3
47,075 - Ga0059261_0053 0.27 -0.4
47,210 - Ga0059261_0053 0.46 -0.4
47,314 - Ga0059261_0053 0.60 -1.0
47,325 + Ga0059261_0053 0.61 +0.2
47,325 + Ga0059261_0053 0.61 -1.1
47,354 + Ga0059261_0053 0.65 -3.9
47,355 - Ga0059261_0053 0.65 -1.5
47,355 - Ga0059261_0053 0.65 -2.2
47,355 - Ga0059261_0053 0.65 -1.8
47,355 - Ga0059261_0053 0.65 -0.1
47,511 + Ga0059261_0053 0.86 -0.5
47,717 + Ga0059261_0054 0.14 -0.4
47,717 + Ga0059261_0054 0.14 -0.1
47,717 + Ga0059261_0054 0.14 -2.3
47,717 + -0.8
47,717 + Ga0059261_0054 0.14 -1.5
47,717 + Ga0059261_0054 0.14 -0.3
47,717 + Ga0059261_0054 0.14 -1.5
47,717 + Ga0059261_0054 0.14 -1.8
47,718 - Ga0059261_0054 0.14 -1.9
47,718 - Ga0059261_0054 0.14 -1.8
47,718 - Ga0059261_0054 0.14 -1.2
47,718 - Ga0059261_0054 0.14 -0.7
47,718 - -1.8
47,718 - Ga0059261_0054 0.14 +0.2
47,718 - Ga0059261_0054 0.14 -0.7
47,718 - Ga0059261_0054 0.14 +0.5
47,718 - Ga0059261_0054 0.14 -1.1
47,718 - Ga0059261_0054 0.14 -0.5
47,773 + Ga0059261_0054 0.21 -0.0
47,773 + Ga0059261_0054 0.21 -1.6
47,773 + Ga0059261_0054 0.21 +0.1
47,773 + Ga0059261_0054 0.21 -2.0
47,774 - Ga0059261_0054 0.21 +0.2
47,858 + Ga0059261_0054 0.31 -1.8
47,859 - Ga0059261_0054 0.31 -0.4
47,861 + Ga0059261_0054 0.31 -4.0
47,861 + Ga0059261_0054 0.31 -1.5
47,861 + -1.7
47,861 + Ga0059261_0054 0.31 -0.3
47,861 + Ga0059261_0054 0.31 -0.8
47,861 + Ga0059261_0054 0.31 -2.2
47,861 + Ga0059261_0054 0.31 -1.6
47,862 - Ga0059261_0054 0.31 -1.3
47,862 - Ga0059261_0054 0.31 -0.3
47,862 - Ga0059261_0054 0.31 +0.4
47,862 - Ga0059261_0054 0.31 -2.4
47,862 - Ga0059261_0054 0.31 -1.0
47,862 - Ga0059261_0054 0.31 +0.4
47,862 - Ga0059261_0054 0.31 +0.5
47,862 - Ga0059261_0054 0.31 -1.1
47,862 - Ga0059261_0054 0.31 +0.4
47,904 + Ga0059261_0054 0.36 -1.6
47,904 + Ga0059261_0054 0.36 -1.5
47,904 + Ga0059261_0054 0.36 -0.9
47,905 - Ga0059261_0054 0.36 +0.2
47,905 - Ga0059261_0054 0.36 +0.7
47,905 - -0.5
47,905 - Ga0059261_0054 0.36 -0.4
47,905 - Ga0059261_0054 0.36 -0.3
47,905 - Ga0059261_0054 0.36 -0.8
47,906 + Ga0059261_0054 0.36 -0.4
47,906 + Ga0059261_0054 0.36 -1.4
47,906 + Ga0059261_0054 0.36 -1.1
47,906 + Ga0059261_0054 0.36 +0.5
47,906 + Ga0059261_0054 0.36 -3.8
47,906 + Ga0059261_0054 0.36 +0.0
47,906 + Ga0059261_0054 0.36 -2.6
47,906 + Ga0059261_0054 0.36 -1.7
47,906 + Ga0059261_0054 0.36 -2.7
47,906 + Ga0059261_0054 0.36 -0.9
47,907 - Ga0059261_0054 0.36 -0.7
47,907 - Ga0059261_0054 0.36 +0.5
47,907 - Ga0059261_0054 0.36 -0.1
47,907 - Ga0059261_0054 0.36 -0.7
47,907 - Ga0059261_0054 0.36 +1.3
47,907 - Ga0059261_0054 0.36 +0.8
47,907 - Ga0059261_0054 0.36 +0.2
48,021 + Ga0059261_0054 0.50 -0.0
48,021 + Ga0059261_0054 0.50 -0.3
48,022 - Ga0059261_0054 0.50 -1.5
48,022 - Ga0059261_0054 0.50 -0.2
48,045 + Ga0059261_0054 0.52 +0.0
48,045 + Ga0059261_0054 0.52 -0.8
48,046 - Ga0059261_0054 0.52 +1.2
48,104 + Ga0059261_0054 0.59 -0.0
48,104 + Ga0059261_0054 0.59 -1.9
48,104 + Ga0059261_0054 0.59 -0.7
48,105 - Ga0059261_0054 0.59 -0.2
48,105 - Ga0059261_0054 0.59 -0.2
48,105 - Ga0059261_0054 0.59 -1.2
48,105 - Ga0059261_0054 0.59 -0.1
48,105 - Ga0059261_0054 0.59 -0.3
48,350 + Ga0059261_0054 0.88 -0.5
48,350 + Ga0059261_0054 0.88 +0.4
48,350 + Ga0059261_0054 0.88 -0.1
48,350 + Ga0059261_0054 0.88 -1.0
48,350 + Ga0059261_0054 0.88 +0.1
48,368 + -0.7
48,368 + -0.2
48,368 + -2.6
48,368 + -1.6
48,368 + -0.7
48,369 - -0.4
48,453 + -1.5
48,454 - +0.9
48,454 - +0.2
48,965 + -1.1
48,966 - Ga0059261_0055 0.21 +0.6
48,966 - Ga0059261_0055 0.21 -0.5

Or see this region's nucleotide sequence