Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13780

Experiment: L-tyrosine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS13770 and BWI76_RS13775 are separated by 9 nucleotidesBWI76_RS13775 and BWI76_RS13780 overlap by 4 nucleotidesBWI76_RS13780 and BWI76_RS13785 overlap by 4 nucleotidesBWI76_RS13785 and BWI76_RS13790 overlap by 4 nucleotides BWI76_RS13770: BWI76_RS13770 - alkylhydroperoxidase domain protein, at 2,870,997 to 2,872,088 _RS13770 BWI76_RS13775: BWI76_RS13775 - putative FMN-dependent luciferase-like monooxygenase, at 2,872,098 to 2,873,087 _RS13775 BWI76_RS13780: BWI76_RS13780 - ABC transporter ATP-binding protein, at 2,873,084 to 2,874,688 _RS13780 BWI76_RS13785: BWI76_RS13785 - ABC transporter permease, at 2,874,685 to 2,875,536 _RS13785 BWI76_RS13790: BWI76_RS13790 - peptide ABC transporter permease, at 2,875,533 to 2,876,477 _RS13790 Position (kb) 2873 2874 2875Strain fitness (log2 ratio) -3 -2 -1 0 1at 2872.152 kb on + strandat 2872.166 kb on + strandat 2872.272 kb on - strand, within BWI76_RS13775at 2872.532 kb on + strand, within BWI76_RS13775at 2872.598 kb on - strand, within BWI76_RS13775at 2873.141 kb on + strandat 2873.152 kb on - strandat 2873.396 kb on + strand, within BWI76_RS13780at 2873.442 kb on + strand, within BWI76_RS13780at 2873.948 kb on - strand, within BWI76_RS13780at 2874.219 kb on - strand, within BWI76_RS13780at 2874.222 kb on + strand, within BWI76_RS13780at 2874.256 kb on + strand, within BWI76_RS13780at 2874.256 kb on + strand, within BWI76_RS13780at 2874.266 kb on + strand, within BWI76_RS13780at 2874.278 kb on - strand, within BWI76_RS13780at 2874.387 kb on - strand, within BWI76_RS13780at 2874.987 kb on - strand, within BWI76_RS13785at 2875.108 kb on + strand, within BWI76_RS13785at 2875.640 kb on - strand, within BWI76_RS13790

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
remove
2,872,152 + -0.5
2,872,166 + -2.1
2,872,272 - BWI76_RS13775 0.18 -3.1
2,872,532 + BWI76_RS13775 0.44 -2.3
2,872,598 - BWI76_RS13775 0.51 +0.5
2,873,141 + +1.1
2,873,152 - -1.3
2,873,396 + BWI76_RS13780 0.19 +0.4
2,873,442 + BWI76_RS13780 0.22 +0.1
2,873,948 - BWI76_RS13780 0.54 +1.4
2,874,219 - BWI76_RS13780 0.71 -0.3
2,874,222 + BWI76_RS13780 0.71 +0.1
2,874,256 + BWI76_RS13780 0.73 -1.5
2,874,256 + BWI76_RS13780 0.73 +1.0
2,874,266 + BWI76_RS13780 0.74 -1.0
2,874,278 - BWI76_RS13780 0.74 +0.6
2,874,387 - BWI76_RS13780 0.81 -2.1
2,874,987 - BWI76_RS13785 0.35 -2.0
2,875,108 + BWI76_RS13785 0.50 -0.6
2,875,640 - BWI76_RS13790 0.11 -0.2

Or see this region's nucleotide sequence