Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04825

Experiment: L-tyrosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04815 and BWI76_RS04820 overlap by 1 nucleotidesBWI76_RS04820 and BWI76_RS04825 are separated by 347 nucleotidesBWI76_RS04825 and BWI76_RS04830 are separated by 29 nucleotides BWI76_RS04815: BWI76_RS04815 - cell division protein ZapD, at 1,006,026 to 1,006,769 _RS04815 BWI76_RS04820: BWI76_RS04820 - dephospho-CoA kinase, at 1,006,769 to 1,007,389 _RS04820 BWI76_RS04825: BWI76_RS04825 - guanosine monophosphate reductase, at 1,007,737 to 1,008,780 _RS04825 BWI76_RS04830: BWI76_RS04830 - type IV pilin biogenesis protein, at 1,008,810 to 1,010,015 _RS04830 Position (kb) 1007 1008 1009Strain fitness (log2 ratio) -3 -2 -1 0 1at 1007.616 kb on - strandat 1007.661 kb on + strandat 1007.665 kb on + strandat 1007.692 kb on + strandat 1007.852 kb on + strand, within BWI76_RS04825at 1007.862 kb on + strand, within BWI76_RS04825at 1007.862 kb on + strand, within BWI76_RS04825at 1007.903 kb on - strand, within BWI76_RS04825at 1007.967 kb on + strandat 1007.983 kb on - strand, within BWI76_RS04825at 1008.029 kb on + strand, within BWI76_RS04825at 1008.037 kb on - strand, within BWI76_RS04825at 1008.331 kb on - strand, within BWI76_RS04825at 1008.531 kb on + strand, within BWI76_RS04825at 1008.539 kb on - strand, within BWI76_RS04825at 1008.578 kb on + strand, within BWI76_RS04825at 1008.583 kb on + strand, within BWI76_RS04825at 1008.878 kb on - strandat 1009.028 kb on + strand, within BWI76_RS04830at 1009.028 kb on + strand, within BWI76_RS04830at 1009.267 kb on + strand, within BWI76_RS04830at 1009.418 kb on + strand, within BWI76_RS04830at 1009.480 kb on + strand, within BWI76_RS04830at 1009.486 kb on + strand, within BWI76_RS04830at 1009.562 kb on - strand, within BWI76_RS04830at 1009.712 kb on + strand, within BWI76_RS04830at 1009.714 kb on + strand, within BWI76_RS04830at 1009.777 kb on + strand, within BWI76_RS04830

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
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1,007,616 - -0.9
1,007,661 + -2.8
1,007,665 + +0.0
1,007,692 + +0.7
1,007,852 + BWI76_RS04825 0.11 -0.0
1,007,862 + BWI76_RS04825 0.12 +0.3
1,007,862 + BWI76_RS04825 0.12 -0.6
1,007,903 - BWI76_RS04825 0.16 -2.8
1,007,967 + -0.5
1,007,983 - BWI76_RS04825 0.24 -1.9
1,008,029 + BWI76_RS04825 0.28 +0.4
1,008,037 - BWI76_RS04825 0.29 -0.2
1,008,331 - BWI76_RS04825 0.57 +0.7
1,008,531 + BWI76_RS04825 0.76 +0.2
1,008,539 - BWI76_RS04825 0.77 +0.6
1,008,578 + BWI76_RS04825 0.81 -1.3
1,008,583 + BWI76_RS04825 0.81 -1.2
1,008,878 - -1.4
1,009,028 + BWI76_RS04830 0.18 +0.2
1,009,028 + BWI76_RS04830 0.18 -0.9
1,009,267 + BWI76_RS04830 0.38 -0.1
1,009,418 + BWI76_RS04830 0.50 -0.9
1,009,480 + BWI76_RS04830 0.56 -0.0
1,009,486 + BWI76_RS04830 0.56 +0.7
1,009,562 - BWI76_RS04830 0.62 +0.7
1,009,712 + BWI76_RS04830 0.75 -0.3
1,009,714 + BWI76_RS04830 0.75 +0.1
1,009,777 + BWI76_RS04830 0.80 +0.5

Or see this region's nucleotide sequence