Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24590 and AO356_24595 are separated by 149 nucleotides AO356_24595 and AO356_24600 are separated by 12 nucleotides
AO356_24590: AO356_24590 - MFS transporter, at 5,559,955 to 5,561,277
_24590
AO356_24595: AO356_24595 - 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) <small>(from data)</small>, at 5,561,427 to 5,562,419
_24595
AO356_24600: AO356_24600 - ketoglutarate semialdehyde dehydrogenase, at 5,562,432 to 5,564,012
_24600
Position (kb) 5561
5562
5563 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5560.696 kb on + strand, within AO356_24590 at 5560.696 kb on + strand, within AO356_24590 at 5560.720 kb on + strand, within AO356_24590 at 5560.720 kb on + strand, within AO356_24590 at 5560.721 kb on - strand, within AO356_24590 at 5560.721 kb on - strand, within AO356_24590 at 5560.721 kb on - strand, within AO356_24590 at 5560.804 kb on + strand, within AO356_24590 at 5560.805 kb on - strand, within AO356_24590 at 5560.805 kb on - strand, within AO356_24590 at 5560.805 kb on - strand, within AO356_24590 at 5560.835 kb on + strand, within AO356_24590 at 5560.888 kb on + strand, within AO356_24590 at 5560.888 kb on + strand, within AO356_24590 at 5560.889 kb on - strand, within AO356_24590 at 5561.086 kb on + strand, within AO356_24590 at 5561.086 kb on + strand, within AO356_24590 at 5561.149 kb on + strand at 5561.149 kb on + strand at 5561.201 kb on - strand at 5561.289 kb on + strand at 5561.290 kb on - strand at 5561.290 kb on - strand at 5561.412 kb on + strand at 5561.426 kb on + strand at 5561.426 kb on + strand at 5561.426 kb on + strand at 5561.434 kb on + strand at 5561.435 kb on - strand at 5561.607 kb on + strand, within AO356_24595 at 5561.844 kb on + strand, within AO356_24595 at 5561.944 kb on - strand, within AO356_24595 at 5561.944 kb on - strand, within AO356_24595 at 5561.944 kb on - strand, within AO356_24595 at 5561.944 kb on - strand, within AO356_24595 at 5562.031 kb on - strand, within AO356_24595 at 5562.125 kb on + strand, within AO356_24595 at 5562.225 kb on + strand, within AO356_24595 at 5562.225 kb on + strand, within AO356_24595 at 5562.225 kb on + strand, within AO356_24595 at 5562.226 kb on - strand, within AO356_24595 at 5562.226 kb on - strand, within AO356_24595 at 5562.417 kb on + strand at 5562.457 kb on - strand at 5562.457 kb on - strand at 5562.606 kb on + strand, within AO356_24600 at 5563.087 kb on - strand, within AO356_24600
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 5,560,696 + AO356_24590 0.56 -0.5 5,560,696 + AO356_24590 0.56 -0.6 5,560,720 + AO356_24590 0.58 -1.8 5,560,720 + AO356_24590 0.58 -3.0 5,560,721 - AO356_24590 0.58 -0.2 5,560,721 - AO356_24590 0.58 -0.4 5,560,721 - AO356_24590 0.58 -0.4 5,560,804 + AO356_24590 0.64 +0.5 5,560,805 - AO356_24590 0.64 +0.5 5,560,805 - AO356_24590 0.64 +0.3 5,560,805 - AO356_24590 0.64 +0.2 5,560,835 + AO356_24590 0.67 -0.3 5,560,888 + AO356_24590 0.71 -0.9 5,560,888 + AO356_24590 0.71 -0.4 5,560,889 - AO356_24590 0.71 +0.4 5,561,086 + AO356_24590 0.85 -1.8 5,561,086 + AO356_24590 0.85 -0.8 5,561,149 + -1.6 5,561,149 + -0.9 5,561,201 - +0.4 5,561,289 + -1.7 5,561,290 - +0.1 5,561,290 - +0.1 5,561,412 + -1.6 5,561,426 + -0.1 5,561,426 + -0.2 5,561,426 + +0.5 5,561,434 + -0.6 5,561,435 - -0.1 5,561,607 + AO356_24595 0.18 -0.4 5,561,844 + AO356_24595 0.42 -0.9 5,561,944 - AO356_24595 0.52 -0.6 5,561,944 - AO356_24595 0.52 -0.4 5,561,944 - AO356_24595 0.52 -0.1 5,561,944 - AO356_24595 0.52 +0.2 5,562,031 - AO356_24595 0.61 +0.3 5,562,125 + AO356_24595 0.70 -1.2 5,562,225 + AO356_24595 0.80 -0.3 5,562,225 + AO356_24595 0.80 +0.4 5,562,225 + AO356_24595 0.80 +0.5 5,562,226 - AO356_24595 0.80 +0.4 5,562,226 - AO356_24595 0.80 +0.3 5,562,417 + -0.5 5,562,457 - +1.1 5,562,457 - -0.8 5,562,606 + AO356_24600 0.11 +0.1 5,563,087 - AO356_24600 0.41 -0.2
Or see this region's nucleotide sequence