Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19790

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19780 and AO356_19785 overlap by 4 nucleotidesAO356_19785 and AO356_19790 are separated by 0 nucleotidesAO356_19790 and AO356_19795 are separated by 199 nucleotides AO356_19780: AO356_19780 - histidine kinase, at 4,435,360 to 4,437,261 _19780 AO356_19785: AO356_19785 - ABC transporter substrate-binding protein, at 4,437,258 to 4,438,190 _19785 AO356_19790: AO356_19790 - TonB-dependent receptor, at 4,438,191 to 4,440,314 _19790 AO356_19795: AO356_19795 - glycerol-3-phosphate dehydrogenase, at 4,440,514 to 4,441,539 _19795 Position (kb) 4438 4439 4440 4441Strain fitness (log2 ratio) -2 -1 0 1 2at 4437.231 kb on + strandat 4437.451 kb on + strand, within AO356_19785at 4437.451 kb on + strand, within AO356_19785at 4437.451 kb on + strand, within AO356_19785at 4437.452 kb on - strand, within AO356_19785at 4437.452 kb on - strand, within AO356_19785at 4437.520 kb on + strand, within AO356_19785at 4437.520 kb on + strand, within AO356_19785at 4437.520 kb on + strand, within AO356_19785at 4437.521 kb on - strand, within AO356_19785at 4437.521 kb on - strand, within AO356_19785at 4437.521 kb on - strand, within AO356_19785at 4437.559 kb on + strand, within AO356_19785at 4437.559 kb on + strand, within AO356_19785at 4437.560 kb on - strand, within AO356_19785at 4437.560 kb on - strand, within AO356_19785at 4437.588 kb on + strand, within AO356_19785at 4437.588 kb on + strand, within AO356_19785at 4437.588 kb on + strand, within AO356_19785at 4437.588 kb on + strand, within AO356_19785at 4437.724 kb on + strand, within AO356_19785at 4437.992 kb on + strand, within AO356_19785at 4437.993 kb on - strand, within AO356_19785at 4437.993 kb on - strand, within AO356_19785at 4438.192 kb on + strandat 4438.192 kb on + strandat 4438.192 kb on + strandat 4438.192 kb on + strandat 4438.192 kb on + strandat 4438.192 kb on + strandat 4438.216 kb on + strandat 4438.217 kb on - strandat 4438.217 kb on - strandat 4438.217 kb on - strandat 4438.217 kb on - strandat 4438.217 kb on - strandat 4438.387 kb on + strandat 4438.388 kb on - strandat 4438.390 kb on + strandat 4438.390 kb on + strandat 4438.391 kb on - strandat 4438.391 kb on - strandat 4438.501 kb on + strand, within AO356_19790at 4438.501 kb on + strand, within AO356_19790at 4438.501 kb on + strand, within AO356_19790at 4438.501 kb on + strand, within AO356_19790at 4438.501 kb on + strand, within AO356_19790at 4438.501 kb on + strand, within AO356_19790at 4438.502 kb on - strand, within AO356_19790at 4438.502 kb on - strand, within AO356_19790at 4438.502 kb on - strand, within AO356_19790at 4438.507 kb on + strand, within AO356_19790at 4438.507 kb on + strand, within AO356_19790at 4438.507 kb on + strand, within AO356_19790at 4438.507 kb on + strand, within AO356_19790at 4438.507 kb on + strand, within AO356_19790at 4438.507 kb on + strand, within AO356_19790at 4438.507 kb on + strand, within AO356_19790at 4438.507 kb on + strand, within AO356_19790at 4438.507 kb on + strand, within AO356_19790at 4438.507 kb on + strand, within AO356_19790at 4438.508 kb on - strand, within AO356_19790at 4438.508 kb on - strand, within AO356_19790at 4438.508 kb on - strand, within AO356_19790at 4438.508 kb on - strand, within AO356_19790at 4438.508 kb on - strand, within AO356_19790at 4438.508 kb on - strand, within AO356_19790at 4438.508 kb on - strand, within AO356_19790at 4438.508 kb on - strand, within AO356_19790at 4438.508 kb on - strand, within AO356_19790at 4438.508 kb on - strand, within AO356_19790at 4438.600 kb on + strand, within AO356_19790at 4438.600 kb on + strand, within AO356_19790at 4438.600 kb on + strand, within AO356_19790at 4438.600 kb on + strand, within AO356_19790at 4438.600 kb on + strand, within AO356_19790at 4438.600 kb on + strand, within AO356_19790at 4438.600 kb on + strand, within AO356_19790at 4438.600 kb on + strand, within AO356_19790at 4438.601 kb on - strand, within AO356_19790at 4438.601 kb on - strand, within AO356_19790at 4438.601 kb on - strand, within AO356_19790at 4438.691 kb on - strand, within AO356_19790at 4438.691 kb on - strand, within AO356_19790at 4438.699 kb on + strand, within AO356_19790at 4438.700 kb on - strand, within AO356_19790at 4438.766 kb on - strand, within AO356_19790at 4438.816 kb on + strand, within AO356_19790at 4438.817 kb on - strand, within AO356_19790at 4438.817 kb on - strand, within AO356_19790at 4438.870 kb on + strand, within AO356_19790at 4438.871 kb on - strand, within AO356_19790at 4438.906 kb on + strand, within AO356_19790at 4438.907 kb on - strand, within AO356_19790at 4439.056 kb on + strand, within AO356_19790at 4439.056 kb on + strand, within AO356_19790at 4439.056 kb on + strand, within AO356_19790at 4439.056 kb on + strand, within AO356_19790at 4439.056 kb on + strand, within AO356_19790at 4439.057 kb on - strand, within AO356_19790at 4439.057 kb on - strand, within AO356_19790at 4439.057 kb on - strand, within AO356_19790at 4439.057 kb on - strand, within AO356_19790at 4439.057 kb on - strand, within AO356_19790at 4439.086 kb on + strand, within AO356_19790at 4439.086 kb on + strand, within AO356_19790at 4439.086 kb on + strand, within AO356_19790at 4439.086 kb on + strand, within AO356_19790at 4439.087 kb on - strand, within AO356_19790at 4439.087 kb on - strand, within AO356_19790at 4439.087 kb on - strand, within AO356_19790at 4439.087 kb on - strand, within AO356_19790at 4439.284 kb on + strand, within AO356_19790at 4439.284 kb on + strand, within AO356_19790at 4439.285 kb on - strand, within AO356_19790at 4439.285 kb on - strand, within AO356_19790at 4439.285 kb on - strand, within AO356_19790at 4439.295 kb on - strand, within AO356_19790at 4439.317 kb on + strand, within AO356_19790at 4439.317 kb on + strand, within AO356_19790at 4439.317 kb on + strand, within AO356_19790at 4439.317 kb on + strand, within AO356_19790at 4439.318 kb on - strand, within AO356_19790at 4439.424 kb on + strand, within AO356_19790at 4439.424 kb on + strand, within AO356_19790at 4439.424 kb on + strand, within AO356_19790at 4439.424 kb on + strand, within AO356_19790at 4439.424 kb on + strand, within AO356_19790at 4439.425 kb on - strand, within AO356_19790at 4439.425 kb on - strand, within AO356_19790at 4439.428 kb on + strand, within AO356_19790at 4439.428 kb on + strand, within AO356_19790at 4439.428 kb on + strand, within AO356_19790at 4439.428 kb on + strand, within AO356_19790at 4439.428 kb on + strand, within AO356_19790at 4439.428 kb on + strand, within AO356_19790at 4439.428 kb on + strand, within AO356_19790at 4439.428 kb on + strand, within AO356_19790at 4439.428 kb on + strand, within AO356_19790at 4439.428 kb on + strand, within AO356_19790at 4439.428 kb on + strand, within AO356_19790at 4439.428 kb on + strand, within AO356_19790at 4439.428 kb on + strand, within AO356_19790at 4439.428 kb on + strand, within AO356_19790at 4439.428 kb on + strand, within AO356_19790at 4439.428 kb on + strand, within AO356_19790at 4439.429 kb on - strand, within AO356_19790at 4439.429 kb on - strand, within AO356_19790at 4439.429 kb on - strand, within AO356_19790at 4439.429 kb on - strand, within AO356_19790at 4439.479 kb on + strand, within AO356_19790at 4439.479 kb on + strand, within AO356_19790at 4439.479 kb on + strand, within AO356_19790at 4439.479 kb on + strand, within AO356_19790at 4439.504 kb on + strand, within AO356_19790at 4439.505 kb on - strand, within AO356_19790at 4439.542 kb on + strand, within AO356_19790at 4439.542 kb on + strand, within AO356_19790at 4439.542 kb on + strand, within AO356_19790at 4439.542 kb on + strand, within AO356_19790at 4439.542 kb on + strand, within AO356_19790at 4439.542 kb on + strand, within AO356_19790at 4439.543 kb on - strand, within AO356_19790at 4439.543 kb on - strand, within AO356_19790at 4439.543 kb on - strand, within AO356_19790at 4439.543 kb on - strand, within AO356_19790at 4439.543 kb on - strand, within AO356_19790at 4439.543 kb on - strand, within AO356_19790at 4439.543 kb on - strand, within AO356_19790at 4439.543 kb on - strand, within AO356_19790at 4439.546 kb on + strand, within AO356_19790at 4439.546 kb on + strand, within AO356_19790at 4439.546 kb on + strand, within AO356_19790at 4439.546 kb on + strand, within AO356_19790at 4439.546 kb on + strand, within AO356_19790at 4439.546 kb on + strand, within AO356_19790at 4439.546 kb on + strand, within AO356_19790at 4439.546 kb on + strand, within AO356_19790at 4439.547 kb on - strand, within AO356_19790at 4439.547 kb on - strand, within AO356_19790at 4439.547 kb on - strand, within AO356_19790at 4439.547 kb on - strand, within AO356_19790at 4439.547 kb on - strand, within AO356_19790at 4439.548 kb on + strand, within AO356_19790at 4439.548 kb on + strand, within AO356_19790at 4439.548 kb on + strand, within AO356_19790at 4439.549 kb on - strand, within AO356_19790at 4439.549 kb on - strand, within AO356_19790at 4439.549 kb on - strand, within AO356_19790at 4439.872 kb on + strand, within AO356_19790at 4439.872 kb on + strand, within AO356_19790at 4439.873 kb on - strand, within AO356_19790at 4440.034 kb on + strand, within AO356_19790at 4440.034 kb on + strand, within AO356_19790at 4440.034 kb on + strand, within AO356_19790at 4440.034 kb on + strand, within AO356_19790at 4440.034 kb on + strand, within AO356_19790at 4440.035 kb on - strand, within AO356_19790at 4440.035 kb on - strand, within AO356_19790at 4440.035 kb on - strand, within AO356_19790at 4440.035 kb on - strand, within AO356_19790at 4440.204 kb on + strandat 4440.204 kb on + strandat 4440.205 kb on - strandat 4440.352 kb on + strandat 4440.352 kb on + strandat 4440.404 kb on + strandat 4440.404 kb on + strandat 4440.404 kb on + strandat 4440.405 kb on - strandat 4440.431 kb on + strandat 4440.469 kb on + strandat 4440.469 kb on + strandat 4440.470 kb on - strandat 4440.470 kb on - strandat 4440.470 kb on - strandat 4440.472 kb on - strandat 4440.472 kb on - strandat 4440.513 kb on + strandat 4440.513 kb on + strandat 4440.513 kb on + strandat 4440.514 kb on - strandat 4440.514 kb on - strandat 4441.093 kb on + strand, within AO356_19795at 4441.283 kb on - strand, within AO356_19795

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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4,437,231 + +0.9
4,437,451 + AO356_19785 0.21 +0.4
4,437,451 + AO356_19785 0.21 +0.5
4,437,451 + AO356_19785 0.21 +0.2
4,437,452 - AO356_19785 0.21 -0.0
4,437,452 - AO356_19785 0.21 -0.2
4,437,520 + AO356_19785 0.28 +0.6
4,437,520 + AO356_19785 0.28 +0.1
4,437,520 + AO356_19785 0.28 +0.6
4,437,521 - AO356_19785 0.28 -0.8
4,437,521 - AO356_19785 0.28 +0.1
4,437,521 - AO356_19785 0.28 +0.6
4,437,559 + AO356_19785 0.32 +1.9
4,437,559 + AO356_19785 0.32 +0.8
4,437,560 - AO356_19785 0.32 -0.7
4,437,560 - AO356_19785 0.32 -0.5
4,437,588 + AO356_19785 0.35 +0.8
4,437,588 + AO356_19785 0.35 +0.2
4,437,588 + AO356_19785 0.35 -0.3
4,437,588 + AO356_19785 0.35 -1.1
4,437,724 + AO356_19785 0.50 +0.1
4,437,992 + AO356_19785 0.79 -0.8
4,437,993 - AO356_19785 0.79 -0.3
4,437,993 - AO356_19785 0.79 -1.2
4,438,192 + +0.2
4,438,192 + +1.0
4,438,192 + -0.6
4,438,192 + +0.4
4,438,192 + +0.3
4,438,192 + +1.0
4,438,216 + +0.2
4,438,217 - +0.0
4,438,217 - +0.5
4,438,217 - -0.8
4,438,217 - -0.5
4,438,217 - +0.5
4,438,387 + +0.9
4,438,388 - -0.3
4,438,390 + +1.4
4,438,390 + +0.0
4,438,391 - +1.1
4,438,391 - +0.5
4,438,501 + AO356_19790 0.15 +0.2
4,438,501 + AO356_19790 0.15 +0.2
4,438,501 + AO356_19790 0.15 +0.6
4,438,501 + AO356_19790 0.15 +0.9
4,438,501 + AO356_19790 0.15 -0.0
4,438,501 + AO356_19790 0.15 -1.1
4,438,502 - AO356_19790 0.15 +1.7
4,438,502 - AO356_19790 0.15 +0.4
4,438,502 - AO356_19790 0.15 +0.2
4,438,507 + AO356_19790 0.15 +0.3
4,438,507 + AO356_19790 0.15 +0.4
4,438,507 + AO356_19790 0.15 +0.7
4,438,507 + AO356_19790 0.15 -1.8
4,438,507 + AO356_19790 0.15 +0.7
4,438,507 + AO356_19790 0.15 +1.9
4,438,507 + AO356_19790 0.15 +0.5
4,438,507 + AO356_19790 0.15 +0.1
4,438,507 + AO356_19790 0.15 +0.8
4,438,507 + AO356_19790 0.15 +0.2
4,438,508 - AO356_19790 0.15 +0.9
4,438,508 - AO356_19790 0.15 +1.2
4,438,508 - AO356_19790 0.15 -0.1
4,438,508 - AO356_19790 0.15 +0.7
4,438,508 - AO356_19790 0.15 +1.3
4,438,508 - AO356_19790 0.15 +0.0
4,438,508 - AO356_19790 0.15 -0.2
4,438,508 - AO356_19790 0.15 +0.3
4,438,508 - AO356_19790 0.15 +0.3
4,438,508 - AO356_19790 0.15 -0.1
4,438,600 + AO356_19790 0.19 +0.4
4,438,600 + AO356_19790 0.19 +1.0
4,438,600 + AO356_19790 0.19 -1.2
4,438,600 + AO356_19790 0.19 +0.3
4,438,600 + AO356_19790 0.19 -0.8
4,438,600 + AO356_19790 0.19 -0.3
4,438,600 + AO356_19790 0.19 +0.8
4,438,600 + AO356_19790 0.19 -0.0
4,438,601 - AO356_19790 0.19 +1.3
4,438,601 - AO356_19790 0.19 +0.0
4,438,601 - AO356_19790 0.19 +0.6
4,438,691 - AO356_19790 0.24 +0.7
4,438,691 - AO356_19790 0.24 +0.6
4,438,699 + AO356_19790 0.24 +1.4
4,438,700 - AO356_19790 0.24 +0.0
4,438,766 - AO356_19790 0.27 -0.4
4,438,816 + AO356_19790 0.29 +1.6
4,438,817 - AO356_19790 0.29 +0.3
4,438,817 - AO356_19790 0.29 +0.7
4,438,870 + AO356_19790 0.32 -0.1
4,438,871 - AO356_19790 0.32 +0.5
4,438,906 + AO356_19790 0.34 +0.9
4,438,907 - AO356_19790 0.34 -0.1
4,439,056 + AO356_19790 0.41 +0.6
4,439,056 + AO356_19790 0.41 -0.3
4,439,056 + AO356_19790 0.41 +0.4
4,439,056 + AO356_19790 0.41 +0.1
4,439,056 + AO356_19790 0.41 +0.9
4,439,057 - AO356_19790 0.41 +0.3
4,439,057 - AO356_19790 0.41 -0.4
4,439,057 - AO356_19790 0.41 +0.2
4,439,057 - AO356_19790 0.41 +0.4
4,439,057 - AO356_19790 0.41 +1.5
4,439,086 + AO356_19790 0.42 +0.6
4,439,086 + AO356_19790 0.42 +0.9
4,439,086 + AO356_19790 0.42 +0.6
4,439,086 + AO356_19790 0.42 +1.6
4,439,087 - AO356_19790 0.42 +0.3
4,439,087 - AO356_19790 0.42 +0.6
4,439,087 - AO356_19790 0.42 +1.0
4,439,087 - AO356_19790 0.42 +0.7
4,439,284 + AO356_19790 0.51 +0.3
4,439,284 + AO356_19790 0.51 -0.2
4,439,285 - AO356_19790 0.52 +0.4
4,439,285 - AO356_19790 0.52 -0.5
4,439,285 - AO356_19790 0.52 +0.1
4,439,295 - AO356_19790 0.52 -0.1
4,439,317 + AO356_19790 0.53 +0.1
4,439,317 + AO356_19790 0.53 +0.5
4,439,317 + AO356_19790 0.53 +0.5
4,439,317 + AO356_19790 0.53 +0.4
4,439,318 - AO356_19790 0.53 +0.7
4,439,424 + AO356_19790 0.58 +0.9
4,439,424 + AO356_19790 0.58 +0.3
4,439,424 + AO356_19790 0.58 +0.1
4,439,424 + AO356_19790 0.58 +0.6
4,439,424 + AO356_19790 0.58 +0.5
4,439,425 - AO356_19790 0.58 +0.4
4,439,425 - AO356_19790 0.58 +0.2
4,439,428 + AO356_19790 0.58 -0.1
4,439,428 + AO356_19790 0.58 +0.6
4,439,428 + AO356_19790 0.58 +1.4
4,439,428 + AO356_19790 0.58 +0.5
4,439,428 + AO356_19790 0.58 +0.1
4,439,428 + AO356_19790 0.58 +0.9
4,439,428 + AO356_19790 0.58 +0.1
4,439,428 + AO356_19790 0.58 +0.4
4,439,428 + AO356_19790 0.58 +0.7
4,439,428 + AO356_19790 0.58 -0.1
4,439,428 + AO356_19790 0.58 -0.0
4,439,428 + AO356_19790 0.58 -0.3
4,439,428 + AO356_19790 0.58 -0.5
4,439,428 + AO356_19790 0.58 +0.5
4,439,428 + AO356_19790 0.58 +0.8
4,439,428 + AO356_19790 0.58 +0.9
4,439,429 - AO356_19790 0.58 -0.2
4,439,429 - AO356_19790 0.58 -0.0
4,439,429 - AO356_19790 0.58 +0.0
4,439,429 - AO356_19790 0.58 +0.3
4,439,479 + AO356_19790 0.61 +0.8
4,439,479 + AO356_19790 0.61 +0.3
4,439,479 + AO356_19790 0.61 +0.7
4,439,479 + AO356_19790 0.61 +0.1
4,439,504 + AO356_19790 0.62 +0.6
4,439,505 - AO356_19790 0.62 +0.6
4,439,542 + AO356_19790 0.64 -0.7
4,439,542 + AO356_19790 0.64 +0.6
4,439,542 + AO356_19790 0.64 +0.2
4,439,542 + AO356_19790 0.64 +0.0
4,439,542 + AO356_19790 0.64 +0.2
4,439,542 + AO356_19790 0.64 +0.8
4,439,543 - AO356_19790 0.64 +1.1
4,439,543 - AO356_19790 0.64 +0.2
4,439,543 - AO356_19790 0.64 +0.7
4,439,543 - AO356_19790 0.64 +0.3
4,439,543 - AO356_19790 0.64 +1.0
4,439,543 - AO356_19790 0.64 +0.6
4,439,543 - AO356_19790 0.64 +0.3
4,439,543 - AO356_19790 0.64 +0.4
4,439,546 + AO356_19790 0.64 +0.9
4,439,546 + AO356_19790 0.64 +1.3
4,439,546 + AO356_19790 0.64 +0.4
4,439,546 + AO356_19790 0.64 +1.0
4,439,546 + AO356_19790 0.64 +0.2
4,439,546 + AO356_19790 0.64 +0.1
4,439,546 + AO356_19790 0.64 +0.9
4,439,546 + AO356_19790 0.64 +0.4
4,439,547 - AO356_19790 0.64 +0.9
4,439,547 - AO356_19790 0.64 +0.4
4,439,547 - AO356_19790 0.64 +0.6
4,439,547 - AO356_19790 0.64 +1.1
4,439,547 - AO356_19790 0.64 +0.3
4,439,548 + AO356_19790 0.64 +1.0
4,439,548 + AO356_19790 0.64 +1.2
4,439,548 + AO356_19790 0.64 -0.1
4,439,549 - AO356_19790 0.64 +1.0
4,439,549 - AO356_19790 0.64 +0.9
4,439,549 - AO356_19790 0.64 +0.5
4,439,872 + AO356_19790 0.79 -0.2
4,439,872 + AO356_19790 0.79 +0.8
4,439,873 - AO356_19790 0.79 +0.6
4,440,034 + AO356_19790 0.87 -0.1
4,440,034 + AO356_19790 0.87 +1.1
4,440,034 + AO356_19790 0.87 +0.7
4,440,034 + AO356_19790 0.87 +0.6
4,440,034 + AO356_19790 0.87 +0.5
4,440,035 - AO356_19790 0.87 -0.5
4,440,035 - AO356_19790 0.87 -0.2
4,440,035 - AO356_19790 0.87 +0.2
4,440,035 - AO356_19790 0.87 +0.6
4,440,204 + +0.2
4,440,204 + +0.1
4,440,205 - -0.4
4,440,352 + +0.5
4,440,352 + +0.7
4,440,404 + +0.3
4,440,404 + +0.0
4,440,404 + +0.6
4,440,405 - -0.9
4,440,431 + +0.4
4,440,469 + -0.4
4,440,469 + +0.2
4,440,470 - -1.0
4,440,470 - +0.0
4,440,470 - -0.1
4,440,472 - -1.2
4,440,472 - -1.3
4,440,513 + -0.8
4,440,513 + +0.9
4,440,513 + +0.2
4,440,514 - -2.5
4,440,514 - -0.7
4,441,093 + AO356_19795 0.56 -0.7
4,441,283 - AO356_19795 0.75 -2.5

Or see this region's nucleotide sequence