Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04250

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04240 and AO356_04245 are separated by 4 nucleotidesAO356_04245 and AO356_04250 are separated by 84 nucleotidesAO356_04250 and AO356_04255 are separated by 139 nucleotides AO356_04240: AO356_04240 - 3-oxoadipate enol-lactonase, at 962,236 to 963,039 _04240 AO356_04245: AO356_04245 - peptidylprolyl isomerase, at 963,044 to 963,607 _04245 AO356_04250: AO356_04250 - multidrug ABC transporter ATP-binding protein, at 963,692 to 965,524 _04250 AO356_04255: AO356_04255 - acyltransferase superfamily protein, at 965,664 to 966,788 _04255 Position (kb) 963 964 965 966Strain fitness (log2 ratio) -2 -1 0 1 2at 962.730 kb on - strand, within AO356_04240at 962.776 kb on + strand, within AO356_04240at 962.776 kb on + strand, within AO356_04240at 962.776 kb on + strand, within AO356_04240at 962.776 kb on + strand, within AO356_04240at 962.777 kb on - strand, within AO356_04240at 962.777 kb on - strand, within AO356_04240at 962.873 kb on - strand, within AO356_04240at 962.873 kb on - strand, within AO356_04240at 962.873 kb on - strand, within AO356_04240at 962.873 kb on - strand, within AO356_04240at 962.899 kb on + strand, within AO356_04240at 962.900 kb on - strand, within AO356_04240at 962.900 kb on - strand, within AO356_04240at 962.903 kb on + strand, within AO356_04240at 962.903 kb on + strand, within AO356_04240at 962.904 kb on - strand, within AO356_04240at 962.904 kb on - strand, within AO356_04240at 962.904 kb on - strand, within AO356_04240at 962.904 kb on - strand, within AO356_04240at 962.904 kb on - strand, within AO356_04240at 962.904 kb on - strand, within AO356_04240at 962.904 kb on - strand, within AO356_04240at 963.129 kb on + strand, within AO356_04245at 963.129 kb on + strand, within AO356_04245at 963.129 kb on + strand, within AO356_04245at 963.129 kb on + strand, within AO356_04245at 963.129 kb on + strand, within AO356_04245at 963.129 kb on + strand, within AO356_04245at 963.129 kb on + strand, within AO356_04245at 963.129 kb on + strand, within AO356_04245at 963.129 kb on + strand, within AO356_04245at 963.129 kb on + strand, within AO356_04245at 963.130 kb on - strand, within AO356_04245at 963.130 kb on - strand, within AO356_04245at 963.130 kb on - strand, within AO356_04245at 963.130 kb on - strand, within AO356_04245at 963.130 kb on - strand, within AO356_04245at 963.194 kb on - strand, within AO356_04245at 963.212 kb on + strand, within AO356_04245at 963.212 kb on + strand, within AO356_04245at 963.213 kb on - strand, within AO356_04245at 963.213 kb on - strand, within AO356_04245at 963.231 kb on - strand, within AO356_04245at 963.231 kb on - strand, within AO356_04245at 963.656 kb on + strandat 963.687 kb on + strandat 963.687 kb on + strandat 963.687 kb on + strandat 963.687 kb on + strandat 963.688 kb on - strandat 963.688 kb on - strandat 963.688 kb on - strandat 963.776 kb on + strandat 963.777 kb on - strandat 963.777 kb on - strandat 963.782 kb on + strandat 963.782 kb on + strandat 963.782 kb on + strandat 963.782 kb on + strandat 963.782 kb on + strandat 963.782 kb on + strandat 963.782 kb on + strandat 963.782 kb on + strandat 963.783 kb on - strandat 963.783 kb on - strandat 963.783 kb on - strandat 963.783 kb on - strandat 963.783 kb on - strandat 963.783 kb on - strandat 963.783 kb on - strandat 963.783 kb on - strandat 963.785 kb on + strandat 963.786 kb on - strandat 964.064 kb on + strand, within AO356_04250at 964.064 kb on + strand, within AO356_04250at 964.064 kb on + strand, within AO356_04250at 964.064 kb on + strand, within AO356_04250at 964.064 kb on + strand, within AO356_04250at 964.064 kb on + strand, within AO356_04250at 964.065 kb on - strand, within AO356_04250at 964.065 kb on - strand, within AO356_04250at 964.065 kb on - strand, within AO356_04250at 964.065 kb on - strand, within AO356_04250at 964.065 kb on - strand, within AO356_04250at 964.065 kb on - strand, within AO356_04250at 964.065 kb on - strand, within AO356_04250at 964.065 kb on - strand, within AO356_04250at 964.199 kb on + strand, within AO356_04250at 964.199 kb on + strand, within AO356_04250at 964.277 kb on + strand, within AO356_04250at 964.277 kb on + strand, within AO356_04250at 964.278 kb on - strand, within AO356_04250at 964.278 kb on - strand, within AO356_04250at 964.278 kb on - strand, within AO356_04250at 964.295 kb on + strand, within AO356_04250at 964.295 kb on + strand, within AO356_04250at 964.376 kb on + strand, within AO356_04250at 964.376 kb on + strand, within AO356_04250at 964.377 kb on - strand, within AO356_04250at 964.430 kb on + strand, within AO356_04250at 964.541 kb on - strand, within AO356_04250at 964.802 kb on + strand, within AO356_04250at 964.892 kb on - strand, within AO356_04250at 964.925 kb on + strand, within AO356_04250at 964.926 kb on - strand, within AO356_04250at 964.926 kb on - strand, within AO356_04250at 964.926 kb on - strand, within AO356_04250at 964.926 kb on - strand, within AO356_04250at 964.926 kb on - strand, within AO356_04250at 965.064 kb on - strand, within AO356_04250at 965.474 kb on + strandat 965.474 kb on + strandat 965.474 kb on + strandat 965.474 kb on + strandat 965.475 kb on - strandat 965.475 kb on - strandat 965.475 kb on - strandat 965.475 kb on - strandat 965.475 kb on - strandat 965.526 kb on + strandat 965.526 kb on + strandat 965.527 kb on - strandat 965.527 kb on - strandat 965.593 kb on + strandat 965.594 kb on - strandat 965.594 kb on - strandat 965.596 kb on - strandat 965.779 kb on + strand, within AO356_04255at 965.780 kb on - strand, within AO356_04255at 965.780 kb on - strand, within AO356_04255at 965.893 kb on + strand, within AO356_04255at 965.893 kb on + strand, within AO356_04255at 965.894 kb on - strand, within AO356_04255at 965.894 kb on - strand, within AO356_04255at 965.894 kb on - strand, within AO356_04255at 965.894 kb on - strand, within AO356_04255at 965.894 kb on - strand, within AO356_04255at 966.080 kb on - strand, within AO356_04255at 966.103 kb on + strand, within AO356_04255at 966.104 kb on - strand, within AO356_04255at 966.124 kb on + strand, within AO356_04255at 966.292 kb on + strand, within AO356_04255at 966.293 kb on - strand, within AO356_04255at 966.400 kb on + strand, within AO356_04255at 966.401 kb on - strand, within AO356_04255at 966.505 kb on + strand, within AO356_04255at 966.506 kb on - strand, within AO356_04255at 966.508 kb on + strand, within AO356_04255at 966.508 kb on + strand, within AO356_04255at 966.508 kb on + strand, within AO356_04255at 966.509 kb on - strand, within AO356_04255at 966.509 kb on - strand, within AO356_04255at 966.509 kb on - strand, within AO356_04255

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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962,730 - AO356_04240 0.61 +0.1
962,776 + AO356_04240 0.67 -0.1
962,776 + AO356_04240 0.67 +0.5
962,776 + AO356_04240 0.67 +0.4
962,776 + AO356_04240 0.67 +0.4
962,777 - AO356_04240 0.67 +0.7
962,777 - AO356_04240 0.67 +0.1
962,873 - AO356_04240 0.79 -0.9
962,873 - AO356_04240 0.79 +0.2
962,873 - AO356_04240 0.79 +0.7
962,873 - AO356_04240 0.79 -0.7
962,899 + AO356_04240 0.82 +0.3
962,900 - AO356_04240 0.83 -0.7
962,900 - AO356_04240 0.83 +1.0
962,903 + AO356_04240 0.83 -0.3
962,903 + AO356_04240 0.83 +1.3
962,904 - AO356_04240 0.83 -0.2
962,904 - AO356_04240 0.83 -0.3
962,904 - AO356_04240 0.83 -0.3
962,904 - AO356_04240 0.83 +0.7
962,904 - AO356_04240 0.83 -0.4
962,904 - AO356_04240 0.83 -0.3
962,904 - AO356_04240 0.83 +0.1
963,129 + AO356_04245 0.15 +0.7
963,129 + AO356_04245 0.15 -0.0
963,129 + AO356_04245 0.15 -0.2
963,129 + AO356_04245 0.15 +0.1
963,129 + AO356_04245 0.15 +1.2
963,129 + AO356_04245 0.15 +0.3
963,129 + AO356_04245 0.15 -0.3
963,129 + AO356_04245 0.15 -0.5
963,129 + AO356_04245 0.15 +1.2
963,129 + AO356_04245 0.15 +0.4
963,130 - AO356_04245 0.15 -0.1
963,130 - AO356_04245 0.15 +0.7
963,130 - AO356_04245 0.15 +0.4
963,130 - AO356_04245 0.15 +0.8
963,130 - AO356_04245 0.15 +1.1
963,194 - AO356_04245 0.27 +0.2
963,212 + AO356_04245 0.30 +0.1
963,212 + AO356_04245 0.30 -0.3
963,213 - AO356_04245 0.30 +0.6
963,213 - AO356_04245 0.30 -0.2
963,231 - AO356_04245 0.33 +0.3
963,231 - AO356_04245 0.33 +0.8
963,656 + +0.2
963,687 + +0.9
963,687 + -0.8
963,687 + +0.2
963,687 + -0.4
963,688 - -0.5
963,688 - -1.9
963,688 - +0.1
963,776 + +0.1
963,777 - -0.5
963,777 - -1.2
963,782 + -0.5
963,782 + +0.0
963,782 + +0.3
963,782 + +0.4
963,782 + +0.3
963,782 + +0.8
963,782 + +0.4
963,782 + +0.8
963,783 - -0.4
963,783 - -0.0
963,783 - -0.5
963,783 - +0.9
963,783 - +0.4
963,783 - -0.9
963,783 - +0.1
963,783 - -0.4
963,785 + +0.5
963,786 - +0.6
964,064 + AO356_04250 0.20 -0.7
964,064 + AO356_04250 0.20 -0.2
964,064 + AO356_04250 0.20 -0.3
964,064 + AO356_04250 0.20 +0.3
964,064 + AO356_04250 0.20 +0.1
964,064 + AO356_04250 0.20 -0.4
964,065 - AO356_04250 0.20 +0.5
964,065 - AO356_04250 0.20 +0.8
964,065 - AO356_04250 0.20 +0.8
964,065 - AO356_04250 0.20 +0.9
964,065 - AO356_04250 0.20 +2.3
964,065 - AO356_04250 0.20 +0.2
964,065 - AO356_04250 0.20 +0.5
964,065 - AO356_04250 0.20 -0.0
964,199 + AO356_04250 0.28 +0.1
964,199 + AO356_04250 0.28 +0.5
964,277 + AO356_04250 0.32 +0.2
964,277 + AO356_04250 0.32 -0.9
964,278 - AO356_04250 0.32 +0.5
964,278 - AO356_04250 0.32 +0.6
964,278 - AO356_04250 0.32 +0.3
964,295 + AO356_04250 0.33 -0.6
964,295 + AO356_04250 0.33 +0.8
964,376 + AO356_04250 0.37 +0.7
964,376 + AO356_04250 0.37 +0.7
964,377 - AO356_04250 0.37 +0.5
964,430 + AO356_04250 0.40 +0.4
964,541 - AO356_04250 0.46 -0.1
964,802 + AO356_04250 0.61 +0.2
964,892 - AO356_04250 0.65 +0.4
964,925 + AO356_04250 0.67 +0.1
964,926 - AO356_04250 0.67 +0.5
964,926 - AO356_04250 0.67 +0.2
964,926 - AO356_04250 0.67 +1.4
964,926 - AO356_04250 0.67 +0.6
964,926 - AO356_04250 0.67 +0.1
965,064 - AO356_04250 0.75 +1.3
965,474 + +0.4
965,474 + -0.4
965,474 + -0.4
965,474 + +0.5
965,475 - -0.8
965,475 - -0.2
965,475 - +0.1
965,475 - +0.4
965,475 - +0.1
965,526 + -0.4
965,526 + -0.3
965,527 - +0.1
965,527 - +0.0
965,593 + +0.2
965,594 - +0.2
965,594 - +1.2
965,596 - -0.0
965,779 + AO356_04255 0.10 +0.2
965,780 - AO356_04255 0.10 -0.7
965,780 - AO356_04255 0.10 -0.3
965,893 + AO356_04255 0.20 +0.3
965,893 + AO356_04255 0.20 +0.6
965,894 - AO356_04255 0.20 +0.9
965,894 - AO356_04255 0.20 +1.0
965,894 - AO356_04255 0.20 -0.3
965,894 - AO356_04255 0.20 +0.5
965,894 - AO356_04255 0.20 +0.3
966,080 - AO356_04255 0.37 +0.5
966,103 + AO356_04255 0.39 +0.3
966,104 - AO356_04255 0.39 +0.1
966,124 + AO356_04255 0.41 +0.6
966,292 + AO356_04255 0.56 -0.7
966,293 - AO356_04255 0.56 +0.3
966,400 + AO356_04255 0.65 -1.7
966,401 - AO356_04255 0.66 +0.2
966,505 + AO356_04255 0.75 +0.6
966,506 - AO356_04255 0.75 +0.6
966,508 + AO356_04255 0.75 -0.0
966,508 + AO356_04255 0.75 -0.2
966,508 + AO356_04255 0.75 -1.1
966,509 - AO356_04255 0.75 +0.2
966,509 - AO356_04255 0.75 +0.3
966,509 - AO356_04255 0.75 -0.2

Or see this region's nucleotide sequence