Strain Fitness in Rhodospirillum rubrum S1H around 11723682

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt11723651 and 11438897 are separated by 0 nucleotides11438897 and 11581260 overlap by 31 nucleotides11581260 and 11723652 overlap by 31 nucleotides11723652 and 11438898 are separated by 0 nucleotides11438898 and 11581261 overlap by 35 nucleotides11581261 and 11723653 overlap by 35 nucleotides11723653 and 11438899 are separated by 0 nucleotides11438899 and 11581262 overlap by 31 nucleotides11581262 and 11723654 overlap by 31 nucleotides11723654 and 11438900 are separated by 0 nucleotides11438900 and 11581263 overlap by 33 nucleotides11581263 and 11723655 overlap by 33 nucleotides11723655 and 11438901 are separated by 0 nucleotides11438901 and 11581264 overlap by 31 nucleotides11581264 and 11723656 overlap by 31 nucleotides11723656 and 11438902 are separated by 0 nucleotides11438902 and 11581265 overlap by 34 nucleotides11581265 and 11723657 overlap by 34 nucleotides11723657 and 11438903 are separated by 0 nucleotides11438903 and 11581266 overlap by 31 nucleotides11581266 and 11723658 overlap by 31 nucleotides11723658 and 11438904 are separated by 0 nucleotides11438904 and 11581267 overlap by 34 nucleotides11581267 and 11723659 overlap by 34 nucleotides11723659 and 11438905 are separated by 0 nucleotides11438905 and 11581268 overlap by 31 nucleotides11581268 and 11723660 overlap by 31 nucleotides11723660 and 11438906 are separated by 0 nucleotides11438906 and 11581269 overlap by 34 nucleotides11581269 and 11723661 overlap by 34 nucleotides11723661 and 11438907 are separated by 0 nucleotides11438907 and 11581270 overlap by 31 nucleotides11581270 and 11723662 overlap by 31 nucleotides11723662 and 11438908 are separated by 0 nucleotides11438908 and 11581271 overlap by 36 nucleotides11581271 and 11723663 overlap by 36 nucleotides11723663 and 11438909 are separated by 0 nucleotides11438909 and 11581272 overlap by 31 nucleotides11581272 and 11723664 overlap by 31 nucleotides11723664 and 11438910 are separated by 0 nucleotides11438910 and 11581273 overlap by 33 nucleotides11581273 and 11723665 overlap by 33 nucleotides11723665 and 11438911 are separated by 0 nucleotides11438911 and 11581274 overlap by 31 nucleotides11581274 and 11723666 overlap by 31 nucleotides11723666 and 11438912 are separated by 0 nucleotides11438912 and 11581275 overlap by 35 nucleotides11581275 and 11723667 overlap by 35 nucleotides11723667 and 11438913 are separated by 0 nucleotides11438913 and 11581276 overlap by 31 nucleotides11581276 and 11723668 overlap by 31 nucleotides11723668 and 11438914 are separated by 0 nucleotides11438914 and 11581277 overlap by 33 nucleotides11581277 and 11723669 overlap by 33 nucleotides11723669 and 11438915 are separated by 0 nucleotides11438915 and 11581278 overlap by 31 nucleotides11581278 and 11723670 overlap by 31 nucleotides11723670 and 11438916 are separated by 0 nucleotides11438916 and 11581279 overlap by 36 nucleotides11581279 and 11723671 overlap by 36 nucleotides11723671 and 11438917 are separated by 0 nucleotides11438917 and 11581280 overlap by 31 nucleotides11581280 and 11723672 overlap by 31 nucleotides11723672 and 11438918 are separated by 0 nucleotides11438918 and 11581281 overlap by 33 nucleotides11581281 and 11723673 overlap by 33 nucleotides11723673 and 11438919 are separated by 0 nucleotides11438919 and 11581282 overlap by 31 nucleotides11581282 and 11723674 overlap by 31 nucleotides11723674 and 11438920 are separated by 0 nucleotides11438920 and 11581283 overlap by 33 nucleotides11581283 and 11723675 overlap by 33 nucleotides11723675 and 11438921 are separated by 0 nucleotides11438921 and 11581284 overlap by 31 nucleotides11581284 and 11723676 overlap by 31 nucleotides11723676 and 11438922 are separated by 0 nucleotides11438922 and 11581285 overlap by 34 nucleotides11581285 and 11723677 overlap by 34 nucleotides11723677 and 11438923 are separated by 0 nucleotides11438923 and 11581286 overlap by 31 nucleotides11581286 and 11723678 overlap by 31 nucleotides11723678 and 11438924 are separated by 0 nucleotides11438924 and 11581287 overlap by 34 nucleotides11581287 and 11723679 overlap by 34 nucleotides11723679 and 11438925 are separated by 0 nucleotides11438925 and 11581288 overlap by 31 nucleotides11581288 and 11723680 overlap by 31 nucleotides11723680 and 11438926 are separated by 0 nucleotides11438926 and 11581289 overlap by 32 nucleotides11581289 and 11723681 overlap by 32 nucleotides11723681 and 11438927 are separated by 0 nucleotides11438927 and 11581290 overlap by 31 nucleotides11581290 and 11723682 overlap by 31 nucleotides11723682 and Rru_A1435 are separated by 193 nucleotides 11438896 - no description, at 1,694,930 to 1,694,962 11438896 11581259 - no description, at 1,694,930 to 1,694,962 11581259 11723651 - no description, at 1,694,930 to 1,694,962 11723651 11438897 - no description, at 1,694,963 to 1,694,993 11438897 11581260 - no description, at 1,694,963 to 1,694,993 11581260 11723652 - no description, at 1,694,963 to 1,694,993 11723652 11438898 - no description, at 1,694,994 to 1,695,028 11438898 11581261 - no description, at 1,694,994 to 1,695,028 11581261 11723653 - no description, at 1,694,994 to 1,695,028 11723653 11438899 - no description, at 1,695,029 to 1,695,059 11438899 11581262 - no description, at 1,695,029 to 1,695,059 11581262 11723654 - no description, at 1,695,029 to 1,695,059 11723654 11438900 - no description, at 1,695,060 to 1,695,092 11438900 11581263 - no description, at 1,695,060 to 1,695,092 11581263 11723655 - no description, at 1,695,060 to 1,695,092 11723655 11438901 - no description, at 1,695,093 to 1,695,123 11438901 11581264 - no description, at 1,695,093 to 1,695,123 11581264 11723656 - no description, at 1,695,093 to 1,695,123 11723656 11438902 - no description, at 1,695,124 to 1,695,157 11438902 11581265 - no description, at 1,695,124 to 1,695,157 11581265 11723657 - no description, at 1,695,124 to 1,695,157 11723657 11438903 - no description, at 1,695,158 to 1,695,188 11438903 11581266 - no description, at 1,695,158 to 1,695,188 11581266 11723658 - no description, at 1,695,158 to 1,695,188 11723658 11438904 - no description, at 1,695,189 to 1,695,222 11438904 11581267 - no description, at 1,695,189 to 1,695,222 11581267 11723659 - no description, at 1,695,189 to 1,695,222 11723659 11438905 - no description, at 1,695,223 to 1,695,253 11438905 11581268 - no description, at 1,695,223 to 1,695,253 11581268 11723660 - no description, at 1,695,223 to 1,695,253 11723660 11438906 - no description, at 1,695,254 to 1,695,287 11438906 11581269 - no description, at 1,695,254 to 1,695,287 11581269 11723661 - no description, at 1,695,254 to 1,695,287 11723661 11438907 - no description, at 1,695,288 to 1,695,318 11438907 11581270 - no description, at 1,695,288 to 1,695,318 11581270 11723662 - no description, at 1,695,288 to 1,695,318 11723662 11438908 - no description, at 1,695,319 to 1,695,354 11438908 11581271 - no description, at 1,695,319 to 1,695,354 11581271 11723663 - no description, at 1,695,319 to 1,695,354 11723663 11438909 - no description, at 1,695,355 to 1,695,385 11438909 11581272 - no description, at 1,695,355 to 1,695,385 11581272 11723664 - no description, at 1,695,355 to 1,695,385 11723664 11438910 - no description, at 1,695,386 to 1,695,418 11438910 11581273 - no description, at 1,695,386 to 1,695,418 11581273 11723665 - no description, at 1,695,386 to 1,695,418 11723665 11438911 - no description, at 1,695,419 to 1,695,449 11438911 11581274 - no description, at 1,695,419 to 1,695,449 11581274 11723666 - no description, at 1,695,419 to 1,695,449 11723666 11438912 - no description, at 1,695,450 to 1,695,484 11438912 11581275 - no description, at 1,695,450 to 1,695,484 11581275 11723667 - no description, at 1,695,450 to 1,695,484 11723667 11438913 - no description, at 1,695,485 to 1,695,515 11438913 11581276 - no description, at 1,695,485 to 1,695,515 11581276 11723668 - no description, at 1,695,485 to 1,695,515 11723668 11438914 - no description, at 1,695,516 to 1,695,548 11438914 11581277 - no description, at 1,695,516 to 1,695,548 11581277 11723669 - no description, at 1,695,516 to 1,695,548 11723669 11438915 - no description, at 1,695,549 to 1,695,579 11438915 11581278 - no description, at 1,695,549 to 1,695,579 11581278 11723670 - no description, at 1,695,549 to 1,695,579 11723670 11438916 - no description, at 1,695,580 to 1,695,615 11438916 11581279 - no description, at 1,695,580 to 1,695,615 11581279 11723671 - no description, at 1,695,580 to 1,695,615 11723671 11438917 - no description, at 1,695,616 to 1,695,646 11438917 11581280 - no description, at 1,695,616 to 1,695,646 11581280 11723672 - no description, at 1,695,616 to 1,695,646 11723672 11438918 - no description, at 1,695,647 to 1,695,679 11438918 11581281 - no description, at 1,695,647 to 1,695,679 11581281 11723673 - no description, at 1,695,647 to 1,695,679 11723673 11438919 - no description, at 1,695,680 to 1,695,710 11438919 11581282 - no description, at 1,695,680 to 1,695,710 11581282 11723674 - no description, at 1,695,680 to 1,695,710 11723674 11438920 - no description, at 1,695,711 to 1,695,743 11438920 11581283 - no description, at 1,695,711 to 1,695,743 11581283 11723675 - no description, at 1,695,711 to 1,695,743 11723675 11438921 - no description, at 1,695,744 to 1,695,774 11438921 11581284 - no description, at 1,695,744 to 1,695,774 11581284 11723676 - no description, at 1,695,744 to 1,695,774 11723676 11438922 - no description, at 1,695,775 to 1,695,808 11438922 11581285 - no description, at 1,695,775 to 1,695,808 11581285 11723677 - no description, at 1,695,775 to 1,695,808 11723677 11438923 - no description, at 1,695,809 to 1,695,839 11438923 11581286 - no description, at 1,695,809 to 1,695,839 11581286 11723678 - no description, at 1,695,809 to 1,695,839 11723678 11438924 - no description, at 1,695,840 to 1,695,873 11438924 11581287 - no description, at 1,695,840 to 1,695,873 11581287 11723679 - no description, at 1,695,840 to 1,695,873 11723679 11438925 - no description, at 1,695,874 to 1,695,904 11438925 11581288 - no description, at 1,695,874 to 1,695,904 11581288 11723680 - no description, at 1,695,874 to 1,695,904 11723680 11438926 - no description, at 1,695,905 to 1,695,936 11438926 11581289 - no description, at 1,695,905 to 1,695,936 11581289 11723681 - no description, at 1,695,905 to 1,695,936 11723681 11438927 - no description, at 1,695,937 to 1,695,967 11438927 11581290 - no description, at 1,695,937 to 1,695,967 11581290 11723682 - no description, at 1,695,937 to 1,695,967 11723682 Rru_A1435: Rru_A1435 - Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI), at 1,696,161 to 1,697,498 _A1435 Position (kb) 1695 1696Strain fitness (log2 ratio) -1 0 1 2 3at 1694.998 kb on - strandat 1695.137 kb on + strandat 1695.137 kb on + strandat 1695.137 kb on + strandat 1695.137 kb on + strandat 1695.137 kb on + strandat 1695.137 kb on + strandat 1695.137 kb on + strandat 1695.137 kb on + strandat 1695.138 kb on - strandat 1695.138 kb on - strandat 1695.138 kb on - strandat 1695.138 kb on - strandat 1695.138 kb on - strandat 1695.138 kb on - strandat 1695.470 kb on + strandat 1695.597 kb on + strandat 1695.598 kb on - strandat 1695.610 kb on + strandat 1695.610 kb on + strandat 1695.610 kb on + strandat 1695.611 kb on - strandat 1695.800 kb on + strandat 1695.800 kb on + strandat 1695.800 kb on + strandat 1695.800 kb on + strandat 1695.801 kb on - strandat 1695.801 kb on - strandat 1695.979 kb on + strandat 1695.980 kb on - strandat 1695.980 kb on - strandat 1696.219 kb on + strandat 1696.219 kb on + strandat 1696.560 kb on + strand, within Rru_A1435at 1696.601 kb on - strand, within Rru_A1435at 1696.601 kb on - strand, within Rru_A1435

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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1,694,998 - -0.2
1,695,137 + +0.9
1,695,137 + +2.2
1,695,137 + -0.1
1,695,137 + -0.1
1,695,137 + +1.2
1,695,137 + +1.6
1,695,137 + -0.1
1,695,137 + -0.1
1,695,138 - +0.3
1,695,138 - +1.1
1,695,138 - -0.1
1,695,138 - +0.6
1,695,138 - -0.1
1,695,138 - -0.6
1,695,470 + +0.3
1,695,597 + -0.1
1,695,598 - +0.8
1,695,610 + -0.1
1,695,610 + -0.1
1,695,610 + -0.1
1,695,611 - +2.5
1,695,800 + +3.3
1,695,800 + +1.7
1,695,800 + -0.3
1,695,800 + -0.1
1,695,801 - +1.5
1,695,801 - +0.2
1,695,979 + +2.3
1,695,980 - +1.6
1,695,980 - +0.6
1,696,219 + -0.1
1,696,219 + +2.0
1,696,560 + Rru_A1435 0.30 -0.1
1,696,601 - Rru_A1435 0.33 +1.6
1,696,601 - Rru_A1435 0.33 +2.3

Or see this region's nucleotide sequence