Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3799 and Rru_A3800 are separated by 18 nucleotides Rru_A3800 and Rru_A3801 are separated by 111 nucleotides Rru_A3801 and Rru_A3802 are separated by 142 nucleotides
Rru_A3799: Rru_A3799 - DNA-formamidopyrimidine glycosylase (NCBI), at 4,349,659 to 4,350,504
_A3799
Rru_A3800: Rru_A3800 - hypothetical protein (NCBI), at 4,350,523 to 4,350,984
_A3800
Rru_A3801: Rru_A3801 - Enoyl-CoA hydratase/isomerase (NCBI), at 4,351,096 to 4,351,872
_A3801
Rru_A3802: Rru_A3802 - Ribosomal protein S20p (NCBI), at 4,352,015 to 4,352,281
_A3802
Position (kb) 4351
4352 Strain fitness (log2 ratio) -1
0
1
2
3 at 4350.183 kb on + strand, within Rru_A3799 at 4350.183 kb on + strand, within Rru_A3799 at 4350.184 kb on - strand, within Rru_A3799 at 4350.184 kb on - strand, within Rru_A3799 at 4350.184 kb on - strand, within Rru_A3799 at 4350.184 kb on - strand, within Rru_A3799 at 4350.187 kb on + strand, within Rru_A3799 at 4350.188 kb on - strand, within Rru_A3799 at 4350.188 kb on - strand, within Rru_A3799 at 4350.188 kb on - strand, within Rru_A3799 at 4350.188 kb on - strand, within Rru_A3799 at 4350.188 kb on - strand, within Rru_A3799 at 4350.188 kb on - strand, within Rru_A3799 at 4350.188 kb on - strand, within Rru_A3799 at 4350.188 kb on - strand, within Rru_A3799 at 4350.361 kb on + strand, within Rru_A3799 at 4350.362 kb on - strand, within Rru_A3799 at 4350.386 kb on - strand, within Rru_A3799 at 4350.510 kb on + strand at 4350.510 kb on + strand at 4350.510 kb on + strand at 4350.565 kb on + strand at 4350.627 kb on - strand, within Rru_A3800 at 4350.845 kb on - strand, within Rru_A3800 at 4350.845 kb on - strand, within Rru_A3800 at 4351.070 kb on + strand at 4351.070 kb on + strand at 4351.070 kb on + strand at 4351.070 kb on + strand at 4351.071 kb on - strand at 4351.318 kb on + strand, within Rru_A3801 at 4351.319 kb on - strand, within Rru_A3801 at 4351.319 kb on - strand, within Rru_A3801 at 4351.320 kb on + strand, within Rru_A3801 at 4351.928 kb on + strand at 4351.930 kb on + strand at 4352.280 kb on - strand at 4352.280 kb on - strand at 4352.430 kb on + strand at 4352.702 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 4,350,183 + Rru_A3799 0.62 -0.0 4,350,183 + Rru_A3799 0.62 +1.1 4,350,184 - Rru_A3799 0.62 +1.2 4,350,184 - Rru_A3799 0.62 +1.5 4,350,184 - Rru_A3799 0.62 +1.4 4,350,184 - Rru_A3799 0.62 +2.2 4,350,187 + Rru_A3799 0.62 +1.5 4,350,188 - Rru_A3799 0.63 +2.2 4,350,188 - Rru_A3799 0.63 -0.0 4,350,188 - Rru_A3799 0.63 +1.4 4,350,188 - Rru_A3799 0.63 +0.9 4,350,188 - Rru_A3799 0.63 -1.0 4,350,188 - Rru_A3799 0.63 -0.3 4,350,188 - Rru_A3799 0.63 +1.4 4,350,188 - Rru_A3799 0.63 +1.3 4,350,361 + Rru_A3799 0.83 -1.0 4,350,362 - Rru_A3799 0.83 +1.7 4,350,386 - Rru_A3799 0.86 -0.0 4,350,510 + +2.8 4,350,510 + +1.0 4,350,510 + -0.6 4,350,565 + -0.0 4,350,627 - Rru_A3800 0.23 -0.0 4,350,845 - Rru_A3800 0.70 -0.0 4,350,845 - Rru_A3800 0.70 +1.4 4,351,070 + +1.6 4,351,070 + -0.0 4,351,070 + +0.3 4,351,070 + +1.1 4,351,071 - -0.0 4,351,318 + Rru_A3801 0.29 -0.0 4,351,319 - Rru_A3801 0.29 -0.0 4,351,319 - Rru_A3801 0.29 -0.0 4,351,320 + Rru_A3801 0.29 -1.0 4,351,928 + -0.0 4,351,930 + -0.0 4,352,280 - -0.0 4,352,280 - -0.0 4,352,430 + -0.0 4,352,702 + -0.0
Or see this region's nucleotide sequence