Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3747

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3745 and Rru_A3746 are separated by 146 nucleotidesRru_A3746 and Rru_A3747 are separated by 27 nucleotidesRru_A3747 and Rru_A3748 are separated by 3 nucleotides Rru_A3745: Rru_A3745 - hypothetical protein (NCBI), at 4,294,099 to 4,294,671 _A3745 Rru_A3746: Rru_A3746 - Ribosomal protein L25 (NCBI), at 4,294,818 to 4,295,450 _A3746 Rru_A3747: Rru_A3747 - Aminoacyl-tRNA hydrolase (NCBI), at 4,295,478 to 4,296,209 _A3747 Rru_A3748: Rru_A3748 - hypothetical protein (NCBI), at 4,296,213 to 4,297,316 _A3748 Position (kb) 4295 4296 4297Strain fitness (log2 ratio) -1 0 1 2at 4296.401 kb on + strand, within Rru_A3748at 4296.402 kb on - strand, within Rru_A3748at 4296.402 kb on - strand, within Rru_A3748at 4296.402 kb on - strand, within Rru_A3748at 4296.648 kb on + strand, within Rru_A3748at 4296.648 kb on + strand, within Rru_A3748at 4296.829 kb on - strand, within Rru_A3748at 4297.073 kb on + strand, within Rru_A3748at 4297.073 kb on + strand, within Rru_A3748at 4297.074 kb on - strand, within Rru_A3748at 4297.074 kb on - strand, within Rru_A3748at 4297.203 kb on + strand, within Rru_A3748at 4297.203 kb on + strand, within Rru_A3748at 4297.203 kb on + strand, within Rru_A3748at 4297.203 kb on + strand, within Rru_A3748at 4297.204 kb on - strand, within Rru_A3748

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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4,296,401 + Rru_A3748 0.17 -0.0
4,296,402 - Rru_A3748 0.17 -0.0
4,296,402 - Rru_A3748 0.17 -0.0
4,296,402 - Rru_A3748 0.17 -0.0
4,296,648 + Rru_A3748 0.39 -0.0
4,296,648 + Rru_A3748 0.39 -0.0
4,296,829 - Rru_A3748 0.56 +0.3
4,297,073 + Rru_A3748 0.78 -0.0
4,297,073 + Rru_A3748 0.78 -0.0
4,297,074 - Rru_A3748 0.78 +2.1
4,297,074 - Rru_A3748 0.78 -0.0
4,297,203 + Rru_A3748 0.90 -0.0
4,297,203 + Rru_A3748 0.90 -0.0
4,297,203 + Rru_A3748 0.90 -0.0
4,297,203 + Rru_A3748 0.90 -0.0
4,297,204 - Rru_A3748 0.90 -0.0

Or see this region's nucleotide sequence