Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3726

Experiment: Succinic Acid; Light intensity 9 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A3724 and Rru_A3725 overlap by 8 nucleotidesRru_A3725 and Rru_A3726 overlap by 4 nucleotidesRru_A3726 and Rru_A3727 overlap by 4 nucleotides Rru_A3724: Rru_A3724 - ABC transporter component (NCBI), at 4,276,384 to 4,277,166 _A3724 Rru_A3725: Rru_A3725 - ABC transporter component (NCBI), at 4,277,159 to 4,277,899 _A3725 Rru_A3726: Rru_A3726 - inner-membrane translocator (NCBI), at 4,277,896 to 4,278,798 _A3726 Rru_A3727: Rru_A3727 - inner-membrane translocator (NCBI), at 4,278,795 to 4,279,799 _A3727 Position (kb) 4277 4278 4279Strain fitness (log2 ratio) -1 0 1 2 3at 4276.951 kb on - strand, within Rru_A3724at 4276.951 kb on - strand, within Rru_A3724at 4277.005 kb on + strand, within Rru_A3724at 4277.005 kb on + strand, within Rru_A3724at 4277.006 kb on - strand, within Rru_A3724at 4277.006 kb on - strand, within Rru_A3724at 4277.006 kb on - strand, within Rru_A3724at 4277.150 kb on - strandat 4277.150 kb on - strandat 4277.220 kb on - strandat 4277.306 kb on - strand, within Rru_A3725at 4277.306 kb on - strand, within Rru_A3725at 4277.360 kb on - strand, within Rru_A3725at 4277.801 kb on + strand, within Rru_A3725at 4277.801 kb on + strand, within Rru_A3725at 4277.802 kb on - strand, within Rru_A3725at 4277.802 kb on - strand, within Rru_A3725at 4277.879 kb on + strandat 4277.880 kb on - strandat 4277.880 kb on - strandat 4277.957 kb on - strandat 4277.957 kb on - strandat 4278.046 kb on + strand, within Rru_A3726at 4278.047 kb on - strand, within Rru_A3726at 4278.211 kb on + strand, within Rru_A3726at 4278.211 kb on + strand, within Rru_A3726at 4278.211 kb on + strand, within Rru_A3726at 4278.212 kb on - strand, within Rru_A3726at 4278.212 kb on - strand, within Rru_A3726at 4278.212 kb on - strand, within Rru_A3726at 4278.212 kb on - strand, within Rru_A3726at 4278.212 kb on - strand, within Rru_A3726at 4278.212 kb on - strand, within Rru_A3726at 4278.212 kb on - strand, within Rru_A3726at 4278.212 kb on - strand, within Rru_A3726at 4278.212 kb on - strand, within Rru_A3726at 4278.212 kb on - strand, within Rru_A3726at 4278.292 kb on + strand, within Rru_A3726at 4278.292 kb on + strand, within Rru_A3726at 4278.293 kb on - strand, within Rru_A3726at 4278.293 kb on - strand, within Rru_A3726at 4278.294 kb on + strand, within Rru_A3726at 4278.295 kb on - strand, within Rru_A3726at 4278.432 kb on + strand, within Rru_A3726at 4278.647 kb on - strand, within Rru_A3726at 4278.954 kb on - strand, within Rru_A3727at 4279.003 kb on - strand, within Rru_A3727at 4279.003 kb on - strand, within Rru_A3727at 4279.047 kb on + strand, within Rru_A3727at 4279.047 kb on + strand, within Rru_A3727at 4279.350 kb on + strand, within Rru_A3727at 4279.351 kb on - strand, within Rru_A3727at 4279.351 kb on - strand, within Rru_A3727at 4279.351 kb on - strand, within Rru_A3727at 4279.351 kb on - strand, within Rru_A3727at 4279.488 kb on + strand, within Rru_A3727at 4279.488 kb on + strand, within Rru_A3727at 4279.488 kb on + strand, within Rru_A3727at 4279.489 kb on - strand, within Rru_A3727at 4279.489 kb on - strand, within Rru_A3727at 4279.489 kb on - strand, within Rru_A3727at 4279.489 kb on - strand, within Rru_A3727at 4279.497 kb on + strand, within Rru_A3727at 4279.497 kb on + strand, within Rru_A3727at 4279.498 kb on - strand, within Rru_A3727at 4279.498 kb on - strand, within Rru_A3727at 4279.498 kb on - strand, within Rru_A3727at 4279.740 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
remove
4,276,951 - Rru_A3724 0.72 +1.1
4,276,951 - Rru_A3724 0.72 -0.0
4,277,005 + Rru_A3724 0.79 +0.6
4,277,005 + Rru_A3724 0.79 +1.2
4,277,006 - Rru_A3724 0.79 +0.2
4,277,006 - Rru_A3724 0.79 +0.7
4,277,006 - Rru_A3724 0.79 +1.3
4,277,150 - -0.0
4,277,150 - -0.0
4,277,220 - -0.0
4,277,306 - Rru_A3725 0.20 -1.0
4,277,306 - Rru_A3725 0.20 +2.0
4,277,360 - Rru_A3725 0.27 +1.0
4,277,801 + Rru_A3725 0.87 +3.0
4,277,801 + Rru_A3725 0.87 +2.5
4,277,802 - Rru_A3725 0.87 -0.0
4,277,802 - Rru_A3725 0.87 -0.0
4,277,879 + -0.0
4,277,880 - -0.0
4,277,880 - +1.0
4,277,957 - -0.0
4,277,957 - +0.7
4,278,046 + Rru_A3726 0.17 -0.0
4,278,047 - Rru_A3726 0.17 +1.2
4,278,211 + Rru_A3726 0.35 +1.2
4,278,211 + Rru_A3726 0.35 +0.6
4,278,211 + Rru_A3726 0.35 +2.1
4,278,212 - Rru_A3726 0.35 -0.0
4,278,212 - Rru_A3726 0.35 -0.0
4,278,212 - Rru_A3726 0.35 +1.1
4,278,212 - Rru_A3726 0.35 +1.7
4,278,212 - Rru_A3726 0.35 +0.9
4,278,212 - Rru_A3726 0.35 -0.0
4,278,212 - Rru_A3726 0.35 +0.9
4,278,212 - Rru_A3726 0.35 -0.0
4,278,212 - Rru_A3726 0.35 -0.0
4,278,212 - Rru_A3726 0.35 -0.0
4,278,292 + Rru_A3726 0.44 -0.0
4,278,292 + Rru_A3726 0.44 +1.0
4,278,293 - Rru_A3726 0.44 +1.2
4,278,293 - Rru_A3726 0.44 -0.0
4,278,294 + Rru_A3726 0.44 +1.2
4,278,295 - Rru_A3726 0.44 +1.1
4,278,432 + Rru_A3726 0.59 -0.0
4,278,647 - Rru_A3726 0.83 +2.0
4,278,954 - Rru_A3727 0.16 -0.0
4,279,003 - Rru_A3727 0.21 -0.0
4,279,003 - Rru_A3727 0.21 +1.9
4,279,047 + Rru_A3727 0.25 +0.2
4,279,047 + Rru_A3727 0.25 +2.7
4,279,350 + Rru_A3727 0.55 +3.4
4,279,351 - Rru_A3727 0.55 +0.7
4,279,351 - Rru_A3727 0.55 +1.0
4,279,351 - Rru_A3727 0.55 +1.4
4,279,351 - Rru_A3727 0.55 -0.0
4,279,488 + Rru_A3727 0.69 -0.3
4,279,488 + Rru_A3727 0.69 +0.6
4,279,488 + Rru_A3727 0.69 +0.2
4,279,489 - Rru_A3727 0.69 +2.7
4,279,489 - Rru_A3727 0.69 +1.1
4,279,489 - Rru_A3727 0.69 +0.6
4,279,489 - Rru_A3727 0.69 +1.1
4,279,497 + Rru_A3727 0.70 +1.0
4,279,497 + Rru_A3727 0.70 +0.6
4,279,498 - Rru_A3727 0.70 +1.0
4,279,498 - Rru_A3727 0.70 +0.4
4,279,498 - Rru_A3727 0.70 -0.0
4,279,740 + -0.0

Or see this region's nucleotide sequence