Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3718 and Rru_A3719 are separated by 6 nucleotides Rru_A3719 and Rru_A3720 are separated by 11 nucleotides
Rru_A3718: Rru_A3718 - hypothetical protein (NCBI), at 4,268,153 to 4,269,541
_A3718
Rru_A3719: Rru_A3719 - Methyltransferase FkbM (NCBI), at 4,269,548 to 4,270,414
_A3719
Rru_A3720: Rru_A3720 - Polysaccharide biosynthesis protein (NCBI), at 4,270,426 to 4,271,838
_A3720
Position (kb) 4269
4270
4271 Strain fitness (log2 ratio) -1
0
1
2 at 4268.586 kb on - strand, within Rru_A3718 at 4268.611 kb on - strand, within Rru_A3718 at 4269.317 kb on + strand, within Rru_A3718 at 4269.317 kb on + strand, within Rru_A3718 at 4269.317 kb on + strand, within Rru_A3718 at 4269.317 kb on + strand, within Rru_A3718 at 4269.318 kb on - strand, within Rru_A3718 at 4269.318 kb on - strand, within Rru_A3718 at 4269.540 kb on - strand at 4269.540 kb on - strand at 4269.540 kb on - strand at 4269.725 kb on + strand, within Rru_A3719 at 4269.726 kb on - strand, within Rru_A3719 at 4269.727 kb on + strand, within Rru_A3719 at 4269.727 kb on + strand, within Rru_A3719 at 4269.727 kb on + strand, within Rru_A3719 at 4269.728 kb on - strand, within Rru_A3719 at 4269.728 kb on - strand, within Rru_A3719 at 4269.842 kb on + strand, within Rru_A3719 at 4269.842 kb on + strand, within Rru_A3719 at 4269.843 kb on - strand, within Rru_A3719 at 4269.962 kb on - strand, within Rru_A3719 at 4270.011 kb on - strand, within Rru_A3719 at 4270.011 kb on - strand, within Rru_A3719 at 4270.028 kb on + strand, within Rru_A3719 at 4270.499 kb on - strand at 4270.558 kb on + strand at 4270.558 kb on + strand at 4270.559 kb on - strand at 4270.559 kb on - strand at 4271.133 kb on + strand, within Rru_A3720 at 4271.134 kb on - strand, within Rru_A3720 at 4271.134 kb on - strand, within Rru_A3720
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 4,268,586 - Rru_A3718 0.31 +0.9 4,268,611 - Rru_A3718 0.33 -1.4 4,269,317 + Rru_A3718 0.84 -0.0 4,269,317 + Rru_A3718 0.84 -0.0 4,269,317 + Rru_A3718 0.84 -0.0 4,269,317 + Rru_A3718 0.84 +0.3 4,269,318 - Rru_A3718 0.84 -0.0 4,269,318 - Rru_A3718 0.84 -0.0 4,269,540 - -1.0 4,269,540 - +1.4 4,269,540 - +1.5 4,269,725 + Rru_A3719 0.20 -0.0 4,269,726 - Rru_A3719 0.21 -0.3 4,269,727 + Rru_A3719 0.21 +1.1 4,269,727 + Rru_A3719 0.21 -0.0 4,269,727 + Rru_A3719 0.21 -0.0 4,269,728 - Rru_A3719 0.21 +2.0 4,269,728 - Rru_A3719 0.21 +0.9 4,269,842 + Rru_A3719 0.34 +1.6 4,269,842 + Rru_A3719 0.34 +1.3 4,269,843 - Rru_A3719 0.34 +0.3 4,269,962 - Rru_A3719 0.48 +0.3 4,270,011 - Rru_A3719 0.53 -0.0 4,270,011 - Rru_A3719 0.53 -0.0 4,270,028 + Rru_A3719 0.55 -0.0 4,270,499 - +0.4 4,270,558 + +1.2 4,270,558 + +0.9 4,270,559 - +1.7 4,270,559 - +1.6 4,271,133 + Rru_A3720 0.50 +1.0 4,271,134 - Rru_A3720 0.50 -0.0 4,271,134 - Rru_A3720 0.50 -0.0
Or see this region's nucleotide sequence