Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3657

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3656 and Rru_A3657 are separated by 2 nucleotidesRru_A3657 and Rru_A3658 are separated by 61 nucleotides Rru_A3656: Rru_A3656 - Polysaccharide biosynthesis protein CapD (NCBI), at 4,196,060 to 4,198,018 _A3656 Rru_A3657: Rru_A3657 - Glycosyl transferase, family 4 (NCBI), at 4,198,021 to 4,199,034 _A3657 Rru_A3658: Rru_A3658 - Glycosyl transferase, group 1 (NCBI), at 4,199,096 to 4,200,256 _A3658 Position (kb) 4198 4199 4200Strain fitness (log2 ratio) -1 0 1 2 3 4at 4198.032 kb on - strandat 4198.032 kb on - strandat 4199.065 kb on + strandat 4199.066 kb on - strandat 4199.067 kb on + strandat 4199.068 kb on - strandat 4199.068 kb on - strandat 4199.068 kb on - strandat 4199.863 kb on - strand, within Rru_A3658

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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4,198,032 - +2.0
4,198,032 - +4.2
4,199,065 + -1.0
4,199,066 - +1.8
4,199,067 + -0.0
4,199,068 - -0.0
4,199,068 - -0.0
4,199,068 - -0.0
4,199,863 - Rru_A3658 0.66 -0.0

Or see this region's nucleotide sequence