Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3653 and Rru_A3654 are separated by 141 nucleotides Rru_A3654 and Rru_A3655 are separated by 145 nucleotides Rru_A3655 and Rru_A3656 are separated by 59 nucleotides
Rru_A3653: Rru_A3653 - Protein of unknown function DUF214 (NCBI), at 4,191,254 to 4,193,797
_A3653
Rru_A3654: Rru_A3654 - Protein of unknown function DUF74 (NCBI), at 4,193,939 to 4,194,274
_A3654
Rru_A3655: Rru_A3655 - Phosphoribosylaminoimidazolecarboxamideformyltransferase (NCBI), at 4,194,420 to 4,196,000
_A3655
Rru_A3656: Rru_A3656 - Polysaccharide biosynthesis protein CapD (NCBI), at 4,196,060 to 4,198,018
_A3656
Position (kb)
4194
4195
4196
4197 Strain fitness (log2 ratio)
-1
0
1
2 at 4193.564 kb on + strand at 4193.564 kb on + strand at 4193.564 kb on + strand at 4193.565 kb on - strand at 4193.565 kb on - strand at 4193.576 kb on + strand at 4193.576 kb on + strand at 4193.577 kb on - strand at 4193.795 kb on + strand at 4193.951 kb on + strand at 4194.012 kb on + strand, within Rru_A3654 at 4194.013 kb on - strand, within Rru_A3654 at 4194.053 kb on - strand, within Rru_A3654 at 4194.114 kb on + strand, within Rru_A3654 at 4194.114 kb on + strand, within Rru_A3654 at 4194.114 kb on + strand, within Rru_A3654 at 4194.115 kb on - strand, within Rru_A3654 at 4194.371 kb on - strand at 4194.371 kb on - strand at 4194.371 kb on - strand at 4194.376 kb on + strand at 4194.382 kb on - strand at 4194.382 kb on - strand at 4194.400 kb on + strand at 4194.400 kb on + strand at 4194.422 kb on - strand at 4196.061 kb on + strand at 4196.061 kb on + strand at 4196.062 kb on - strand at 4196.062 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 4,193,564 + +0.6 4,193,564 + -0.0 4,193,564 + +1.0 4,193,565 - -0.0 4,193,565 - +0.9 4,193,576 + -0.0 4,193,576 + -0.0 4,193,577 - -0.0 4,193,795 + +1.1 4,193,951 + +0.9 4,194,012 + Rru_A3654 0.22 -0.0 4,194,013 - Rru_A3654 0.22 -0.0 4,194,053 - Rru_A3654 0.34 +1.0 4,194,114 + Rru_A3654 0.52 +2.1 4,194,114 + Rru_A3654 0.52 -0.0 4,194,114 + Rru_A3654 0.52 -0.0 4,194,115 - Rru_A3654 0.52 -0.0 4,194,371 - +1.1 4,194,371 - +0.8 4,194,371 - +1.3 4,194,376 + +1.6 4,194,382 - +1.3 4,194,382 - -0.0 4,194,400 + -1.0 4,194,400 + +0.2 4,194,422 - -0.0 4,196,061 + -0.0 4,196,061 + -0.0 4,196,062 - +1.0 4,196,062 - -0.0
Or see this region's nucleotide sequence