Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3652

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3650 and Rru_A3651 are separated by 115 nucleotidesRru_A3651 and Rru_A3652 overlap by 4 nucleotidesRru_A3652 and Rru_A3653 overlap by 4 nucleotides Rru_A3650: Rru_A3650 - Lipolytic enzyme, G-D-S-L (NCBI), at 4,189,095 to 4,189,700 _A3650 Rru_A3651: Rru_A3651 - ABC transporter component (NCBI), at 4,189,816 to 4,190,529 _A3651 Rru_A3652: Rru_A3652 - hypothetical protein (NCBI), at 4,190,526 to 4,191,257 _A3652 Rru_A3653: Rru_A3653 - Protein of unknown function DUF214 (NCBI), at 4,191,254 to 4,193,797 _A3653 Position (kb) 4190 4191 4192Strain fitness (log2 ratio) -1 0 1 2 3at 4189.622 kb on - strand, within Rru_A3650at 4189.700 kb on + strandat 4189.700 kb on + strandat 4189.701 kb on - strandat 4189.701 kb on - strandat 4189.701 kb on - strandat 4189.825 kb on - strandat 4189.842 kb on + strandat 4189.842 kb on + strandat 4189.842 kb on + strandat 4189.842 kb on + strandat 4189.843 kb on - strandat 4189.843 kb on - strandat 4189.843 kb on - strandat 4190.412 kb on + strand, within Rru_A3651at 4190.412 kb on + strand, within Rru_A3651at 4190.412 kb on + strand, within Rru_A3651at 4190.413 kb on - strand, within Rru_A3651at 4190.413 kb on - strand, within Rru_A3651at 4190.413 kb on - strand, within Rru_A3651at 4190.413 kb on - strand, within Rru_A3651at 4190.413 kb on - strand, within Rru_A3651at 4190.413 kb on - strand, within Rru_A3651at 4190.693 kb on + strand, within Rru_A3652at 4190.693 kb on + strand, within Rru_A3652at 4190.693 kb on + strand, within Rru_A3652at 4190.932 kb on - strand, within Rru_A3652at 4191.470 kb on + strandat 4191.533 kb on - strand, within Rru_A3653at 4191.533 kb on - strand, within Rru_A3653at 4191.626 kb on + strand, within Rru_A3653at 4191.626 kb on + strand, within Rru_A3653at 4191.626 kb on + strand, within Rru_A3653at 4191.626 kb on + strand, within Rru_A3653at 4191.626 kb on + strand, within Rru_A3653at 4191.627 kb on - strand, within Rru_A3653at 4191.627 kb on - strand, within Rru_A3653at 4191.627 kb on - strand, within Rru_A3653at 4191.905 kb on + strand, within Rru_A3653at 4191.906 kb on - strand, within Rru_A3653at 4192.124 kb on + strand, within Rru_A3653at 4192.124 kb on + strand, within Rru_A3653at 4192.199 kb on + strand, within Rru_A3653at 4192.200 kb on - strand, within Rru_A3653at 4192.200 kb on - strand, within Rru_A3653at 4192.200 kb on - strand, within Rru_A3653at 4192.200 kb on - strand, within Rru_A3653at 4192.200 kb on - strand, within Rru_A3653at 4192.202 kb on - strand, within Rru_A3653

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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4,189,622 - Rru_A3650 0.87 +1.4
4,189,700 + +2.6
4,189,700 + -0.0
4,189,701 - +2.9
4,189,701 - +1.0
4,189,701 - +1.6
4,189,825 - -0.0
4,189,842 + +1.6
4,189,842 + +0.7
4,189,842 + -0.1
4,189,842 + -0.7
4,189,843 - +1.4
4,189,843 - -0.0
4,189,843 - -0.0
4,190,412 + Rru_A3651 0.83 +1.1
4,190,412 + Rru_A3651 0.83 +0.7
4,190,412 + Rru_A3651 0.83 +1.0
4,190,413 - Rru_A3651 0.84 +2.1
4,190,413 - Rru_A3651 0.84 +1.8
4,190,413 - Rru_A3651 0.84 -0.3
4,190,413 - Rru_A3651 0.84 +0.2
4,190,413 - Rru_A3651 0.84 -0.7
4,190,413 - Rru_A3651 0.84 +1.6
4,190,693 + Rru_A3652 0.23 +1.3
4,190,693 + Rru_A3652 0.23 +2.3
4,190,693 + Rru_A3652 0.23 -0.0
4,190,932 - Rru_A3652 0.55 +1.8
4,191,470 + +1.4
4,191,533 - Rru_A3653 0.11 -0.0
4,191,533 - Rru_A3653 0.11 -0.0
4,191,626 + Rru_A3653 0.15 -0.6
4,191,626 + Rru_A3653 0.15 +1.7
4,191,626 + Rru_A3653 0.15 -0.0
4,191,626 + Rru_A3653 0.15 -0.0
4,191,626 + Rru_A3653 0.15 -0.0
4,191,627 - Rru_A3653 0.15 +1.1
4,191,627 - Rru_A3653 0.15 +0.5
4,191,627 - Rru_A3653 0.15 +1.8
4,191,905 + Rru_A3653 0.26 +0.4
4,191,906 - Rru_A3653 0.26 +2.1
4,192,124 + Rru_A3653 0.34 +2.2
4,192,124 + Rru_A3653 0.34 +0.7
4,192,199 + Rru_A3653 0.37 +1.7
4,192,200 - Rru_A3653 0.37 +1.4
4,192,200 - Rru_A3653 0.37 -0.0
4,192,200 - Rru_A3653 0.37 +1.2
4,192,200 - Rru_A3653 0.37 +1.3
4,192,200 - Rru_A3653 0.37 -0.0
4,192,202 - Rru_A3653 0.37 +1.6

Or see this region's nucleotide sequence