Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3586 and Rru_A3587 are separated by 114 nucleotides Rru_A3587 and Rru_A3588 are separated by 464 nucleotides
Rru_A3586: Rru_A3586 - Peptidoglycan-binding LysM (NCBI), at 4,129,234 to 4,130,292
_A3586
Rru_A3587: Rru_A3587 - hypothetical protein (NCBI), at 4,130,407 to 4,131,249
_A3587
Rru_A3588: Rru_A3588 - Cytochrome B561 (NCBI), at 4,131,714 to 4,132,463
_A3588
Position (kb) 4130
4131
4132 Strain fitness (log2 ratio) -1
0
1
2
3 at 4129.527 kb on + strand, within Rru_A3586 at 4129.527 kb on + strand, within Rru_A3586 at 4129.527 kb on + strand, within Rru_A3586 at 4129.527 kb on + strand, within Rru_A3586 at 4129.528 kb on - strand, within Rru_A3586 at 4129.530 kb on - strand, within Rru_A3586 at 4129.530 kb on - strand, within Rru_A3586 at 4129.612 kb on - strand, within Rru_A3586 at 4129.620 kb on - strand, within Rru_A3586 at 4129.620 kb on - strand, within Rru_A3586 at 4129.682 kb on + strand, within Rru_A3586 at 4129.682 kb on + strand, within Rru_A3586 at 4129.683 kb on - strand, within Rru_A3586 at 4130.053 kb on - strand, within Rru_A3586 at 4130.328 kb on + strand at 4130.329 kb on - strand at 4130.329 kb on - strand at 4130.329 kb on - strand at 4130.512 kb on - strand, within Rru_A3587 at 4130.512 kb on - strand, within Rru_A3587 at 4130.512 kb on - strand, within Rru_A3587 at 4130.601 kb on + strand, within Rru_A3587 at 4131.284 kb on + strand at 4131.284 kb on + strand at 4131.284 kb on + strand at 4131.284 kb on + strand at 4131.285 kb on - strand at 4131.288 kb on + strand at 4131.289 kb on - strand at 4131.560 kb on - strand at 4131.710 kb on + strand at 4131.710 kb on + strand at 4131.711 kb on - strand at 4131.711 kb on - strand at 4131.905 kb on + strand, within Rru_A3588 at 4131.905 kb on + strand, within Rru_A3588 at 4131.905 kb on + strand, within Rru_A3588 at 4131.905 kb on + strand, within Rru_A3588 at 4131.906 kb on - strand, within Rru_A3588 at 4131.906 kb on - strand, within Rru_A3588 at 4131.942 kb on + strand, within Rru_A3588 at 4131.942 kb on + strand, within Rru_A3588 at 4132.023 kb on + strand, within Rru_A3588 at 4132.024 kb on - strand, within Rru_A3588 at 4132.024 kb on - strand, within Rru_A3588 at 4132.220 kb on + strand, within Rru_A3588 at 4132.220 kb on + strand, within Rru_A3588 at 4132.220 kb on + strand, within Rru_A3588 at 4132.220 kb on + strand, within Rru_A3588 at 4132.220 kb on + strand, within Rru_A3588 at 4132.220 kb on + strand, within Rru_A3588 at 4132.221 kb on - strand, within Rru_A3588 at 4132.221 kb on - strand, within Rru_A3588 at 4132.221 kb on - strand, within Rru_A3588 at 4132.238 kb on + strand, within Rru_A3588 at 4132.239 kb on - strand, within Rru_A3588 at 4132.239 kb on - strand, within Rru_A3588
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 4,129,527 + Rru_A3586 0.28 +0.0 4,129,527 + Rru_A3586 0.28 +0.0 4,129,527 + Rru_A3586 0.28 +0.0 4,129,527 + Rru_A3586 0.28 +0.0 4,129,528 - Rru_A3586 0.28 -0.4 4,129,530 - Rru_A3586 0.28 +0.0 4,129,530 - Rru_A3586 0.28 -0.7 4,129,612 - Rru_A3586 0.36 +0.0 4,129,620 - Rru_A3586 0.36 +0.0 4,129,620 - Rru_A3586 0.36 +0.3 4,129,682 + Rru_A3586 0.42 +0.0 4,129,682 + Rru_A3586 0.42 +0.0 4,129,683 - Rru_A3586 0.42 +1.0 4,130,053 - Rru_A3586 0.77 +0.0 4,130,328 + +0.5 4,130,329 - +1.4 4,130,329 - +0.0 4,130,329 - +1.1 4,130,512 - Rru_A3587 0.12 +0.3 4,130,512 - Rru_A3587 0.12 +0.0 4,130,512 - Rru_A3587 0.12 +0.1 4,130,601 + Rru_A3587 0.23 +0.9 4,131,284 + +0.0 4,131,284 + +0.5 4,131,284 + +0.0 4,131,284 + +0.3 4,131,285 - +0.7 4,131,288 + +1.0 4,131,289 - -1.6 4,131,560 - +1.5 4,131,710 + +0.9 4,131,710 + +1.0 4,131,711 - +2.2 4,131,711 - +1.7 4,131,905 + Rru_A3588 0.25 +0.9 4,131,905 + Rru_A3588 0.25 +0.0 4,131,905 + Rru_A3588 0.25 +1.3 4,131,905 + Rru_A3588 0.25 +0.0 4,131,906 - Rru_A3588 0.26 +0.0 4,131,906 - Rru_A3588 0.26 +3.3 4,131,942 + Rru_A3588 0.30 -0.3 4,131,942 + Rru_A3588 0.30 +0.4 4,132,023 + Rru_A3588 0.41 +0.0 4,132,024 - Rru_A3588 0.41 +1.6 4,132,024 - Rru_A3588 0.41 +1.9 4,132,220 + Rru_A3588 0.67 +1.4 4,132,220 + Rru_A3588 0.67 +1.2 4,132,220 + Rru_A3588 0.67 +1.4 4,132,220 + Rru_A3588 0.67 +1.6 4,132,220 + Rru_A3588 0.67 +2.1 4,132,220 + Rru_A3588 0.67 +1.0 4,132,221 - Rru_A3588 0.68 +1.5 4,132,221 - Rru_A3588 0.68 +0.2 4,132,221 - Rru_A3588 0.68 +1.0 4,132,238 + Rru_A3588 0.70 +0.9 4,132,239 - Rru_A3588 0.70 +0.0 4,132,239 - Rru_A3588 0.70 +1.5
Or see this region's nucleotide sequence