Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3579 and Rru_A3580 are separated by 13 nucleotides Rru_A3580 and Rru_A3581 are separated by 110 nucleotides Rru_A3581 and Rru_A3582 are separated by 99 nucleotides Rru_A3582 and Rru_A3583 are separated by 59 nucleotides
Rru_A3579: Rru_A3579 - Peptidase M48, Ste24p (NCBI), at 4,122,796 to 4,123,677
_A3579
Rru_A3580: Rru_A3580 - Protein of unknown function DUF6, transmembrane (NCBI), at 4,123,691 to 4,124,575
_A3580
Rru_A3581: Rru_A3581 - Transcriptional coactivator/pterin dehydratase (NCBI), at 4,124,686 to 4,124,976
_A3581
Rru_A3582: Rru_A3582 - Protein of unknown function DUF1025 (NCBI), at 4,125,076 to 4,125,483
_A3582
Rru_A3583: Rru_A3583 - ATP-dependent protease-like (NCBI), at 4,125,543 to 4,127,525
_A3583
Position (kb) 4123
4124
4125 Strain fitness (log2 ratio) -1
0
1
2 at 4122.755 kb on + strand at 4122.755 kb on + strand at 4122.756 kb on - strand at 4122.756 kb on - strand at 4123.004 kb on - strand, within Rru_A3579 at 4123.004 kb on - strand, within Rru_A3579 at 4123.004 kb on - strand, within Rru_A3579 at 4123.057 kb on + strand, within Rru_A3579 at 4123.057 kb on + strand, within Rru_A3579 at 4123.057 kb on + strand, within Rru_A3579 at 4123.057 kb on + strand, within Rru_A3579 at 4123.058 kb on - strand, within Rru_A3579 at 4123.058 kb on - strand, within Rru_A3579 at 4123.058 kb on - strand, within Rru_A3579 at 4123.058 kb on - strand, within Rru_A3579 at 4123.058 kb on - strand, within Rru_A3579 at 4123.058 kb on - strand, within Rru_A3579 at 4123.839 kb on + strand, within Rru_A3580 at 4123.839 kb on + strand, within Rru_A3580 at 4123.839 kb on + strand, within Rru_A3580 at 4123.840 kb on - strand, within Rru_A3580 at 4123.840 kb on - strand, within Rru_A3580 at 4124.079 kb on + strand, within Rru_A3580 at 4124.079 kb on + strand, within Rru_A3580 at 4124.080 kb on - strand, within Rru_A3580 at 4124.277 kb on + strand, within Rru_A3580 at 4124.278 kb on - strand, within Rru_A3580 at 4124.278 kb on - strand, within Rru_A3580 at 4124.328 kb on + strand, within Rru_A3580 at 4124.329 kb on - strand, within Rru_A3580 at 4124.329 kb on - strand, within Rru_A3580 at 4124.329 kb on - strand, within Rru_A3580 at 4124.642 kb on + strand at 4124.769 kb on + strand, within Rru_A3581 at 4124.769 kb on + strand, within Rru_A3581 at 4124.770 kb on - strand, within Rru_A3581 at 4124.783 kb on + strand, within Rru_A3581 at 4124.783 kb on + strand, within Rru_A3581 at 4125.058 kb on + strand at 4125.058 kb on + strand at 4125.058 kb on + strand at 4125.059 kb on - strand at 4125.085 kb on - strand at 4125.362 kb on - strand, within Rru_A3582 at 4125.481 kb on + strand at 4125.481 kb on + strand at 4125.482 kb on - strand at 4125.482 kb on - strand at 4125.500 kb on - strand at 4125.500 kb on - strand at 4125.521 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 4,122,755 + +0.4 4,122,755 + -1.0 4,122,756 - +0.4 4,122,756 - +1.2 4,123,004 - Rru_A3579 0.24 -0.0 4,123,004 - Rru_A3579 0.24 +0.7 4,123,004 - Rru_A3579 0.24 +1.8 4,123,057 + Rru_A3579 0.30 +1.1 4,123,057 + Rru_A3579 0.30 -0.0 4,123,057 + Rru_A3579 0.30 +0.8 4,123,057 + Rru_A3579 0.30 -0.0 4,123,058 - Rru_A3579 0.30 -0.0 4,123,058 - Rru_A3579 0.30 -0.0 4,123,058 - Rru_A3579 0.30 -0.0 4,123,058 - Rru_A3579 0.30 +0.8 4,123,058 - Rru_A3579 0.30 -1.6 4,123,058 - Rru_A3579 0.30 -0.0 4,123,839 + Rru_A3580 0.17 +0.0 4,123,839 + Rru_A3580 0.17 +0.0 4,123,839 + Rru_A3580 0.17 +0.8 4,123,840 - Rru_A3580 0.17 +1.0 4,123,840 - Rru_A3580 0.17 +0.0 4,124,079 + Rru_A3580 0.44 +0.3 4,124,079 + Rru_A3580 0.44 +1.2 4,124,080 - Rru_A3580 0.44 +1.1 4,124,277 + Rru_A3580 0.66 +0.0 4,124,278 - Rru_A3580 0.66 +0.5 4,124,278 - Rru_A3580 0.66 +0.2 4,124,328 + Rru_A3580 0.72 +0.6 4,124,329 - Rru_A3580 0.72 +0.5 4,124,329 - Rru_A3580 0.72 +0.0 4,124,329 - Rru_A3580 0.72 -0.4 4,124,642 + +1.0 4,124,769 + Rru_A3581 0.29 +1.3 4,124,769 + Rru_A3581 0.29 -0.0 4,124,770 - Rru_A3581 0.29 -0.0 4,124,783 + Rru_A3581 0.33 -0.0 4,124,783 + Rru_A3581 0.33 +0.7 4,125,058 + +0.2 4,125,058 + +1.8 4,125,058 + -0.0 4,125,059 - +1.0 4,125,085 - -0.0 4,125,362 - Rru_A3582 0.70 -0.0 4,125,481 + -0.0 4,125,481 + +1.1 4,125,482 - +0.4 4,125,482 - -0.0 4,125,500 - +0.7 4,125,500 - +1.2 4,125,521 - +0.1
Or see this region's nucleotide sequence