Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3576 and Rru_A3577 are separated by 4 nucleotides Rru_A3577 and Rru_A3578 are separated by 12 nucleotides Rru_A3578 and Rru_A3579 are separated by 120 nucleotides
Rru_A3576: Rru_A3576 - UDP-glucuronate 5'-epimerase (NCBI), at 4,120,599 to 4,121,606
_A3576
Rru_A3577: Rru_A3577 - Protein of unknown function DUF6, transmembrane (NCBI), at 4,121,611 to 4,122,465
_A3577
Rru_A3578: Rru_A3578 - hypothetical protein (NCBI), at 4,122,478 to 4,122,675
_A3578
Rru_A3579: Rru_A3579 - Peptidase M48, Ste24p (NCBI), at 4,122,796 to 4,123,677
_A3579
Position (kb)
4122
4123 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4121.793 kb on - strand, within Rru_A3577 at 4121.930 kb on + strand, within Rru_A3577 at 4121.931 kb on - strand, within Rru_A3577 at 4121.931 kb on - strand, within Rru_A3577 at 4121.931 kb on - strand, within Rru_A3577 at 4121.931 kb on - strand, within Rru_A3577 at 4121.979 kb on + strand, within Rru_A3577 at 4121.980 kb on - strand, within Rru_A3577 at 4121.981 kb on + strand, within Rru_A3577 at 4121.981 kb on + strand, within Rru_A3577 at 4121.982 kb on - strand, within Rru_A3577 at 4121.982 kb on - strand, within Rru_A3577 at 4122.228 kb on - strand, within Rru_A3577 at 4122.249 kb on + strand, within Rru_A3577 at 4122.250 kb on - strand, within Rru_A3577 at 4122.251 kb on + strand, within Rru_A3577 at 4122.251 kb on + strand, within Rru_A3577 at 4122.251 kb on + strand, within Rru_A3577 at 4122.479 kb on + strand at 4122.480 kb on - strand at 4122.480 kb on - strand at 4122.516 kb on + strand, within Rru_A3578 at 4122.519 kb on - strand, within Rru_A3578 at 4122.755 kb on + strand at 4122.755 kb on + strand at 4122.756 kb on - strand at 4122.756 kb on - strand at 4123.004 kb on - strand, within Rru_A3579 at 4123.004 kb on - strand, within Rru_A3579 at 4123.004 kb on - strand, within Rru_A3579 at 4123.057 kb on + strand, within Rru_A3579 at 4123.057 kb on + strand, within Rru_A3579 at 4123.057 kb on + strand, within Rru_A3579 at 4123.057 kb on + strand, within Rru_A3579 at 4123.058 kb on - strand, within Rru_A3579 at 4123.058 kb on - strand, within Rru_A3579 at 4123.058 kb on - strand, within Rru_A3579 at 4123.058 kb on - strand, within Rru_A3579 at 4123.058 kb on - strand, within Rru_A3579 at 4123.058 kb on - strand, within Rru_A3579
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 4,121,793 - Rru_A3577 0.21 -0.0 4,121,930 + Rru_A3577 0.37 +0.6 4,121,931 - Rru_A3577 0.37 +0.3 4,121,931 - Rru_A3577 0.37 -1.0 4,121,931 - Rru_A3577 0.37 +0.7 4,121,931 - Rru_A3577 0.37 -0.0 4,121,979 + Rru_A3577 0.43 -0.0 4,121,980 - Rru_A3577 0.43 +1.0 4,121,981 + Rru_A3577 0.43 +0.8 4,121,981 + Rru_A3577 0.43 +2.8 4,121,982 - Rru_A3577 0.43 -0.0 4,121,982 - Rru_A3577 0.43 -0.0 4,122,228 - Rru_A3577 0.72 +0.6 4,122,249 + Rru_A3577 0.75 +0.6 4,122,250 - Rru_A3577 0.75 +0.4 4,122,251 + Rru_A3577 0.75 -0.0 4,122,251 + Rru_A3577 0.75 +1.4 4,122,251 + Rru_A3577 0.75 +1.5 4,122,479 + -0.0 4,122,480 - +1.8 4,122,480 - +0.5 4,122,516 + Rru_A3578 0.19 -0.0 4,122,519 - Rru_A3578 0.21 -0.0 4,122,755 + +0.4 4,122,755 + -1.0 4,122,756 - +0.4 4,122,756 - +1.2 4,123,004 - Rru_A3579 0.24 -0.0 4,123,004 - Rru_A3579 0.24 +0.7 4,123,004 - Rru_A3579 0.24 +1.8 4,123,057 + Rru_A3579 0.30 +1.1 4,123,057 + Rru_A3579 0.30 -0.0 4,123,057 + Rru_A3579 0.30 +0.8 4,123,057 + Rru_A3579 0.30 -0.0 4,123,058 - Rru_A3579 0.30 -0.0 4,123,058 - Rru_A3579 0.30 -0.0 4,123,058 - Rru_A3579 0.30 -0.0 4,123,058 - Rru_A3579 0.30 +0.8 4,123,058 - Rru_A3579 0.30 -1.6 4,123,058 - Rru_A3579 0.30 -0.0
Or see this region's nucleotide sequence