Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3567

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3566 and Rru_A3567 are separated by 4 nucleotidesRru_A3567 and Rru_A3568 are separated by 34 nucleotides Rru_A3566: Rru_A3566 - HemY-like (NCBI), at 4,109,800 to 4,111,101 _A3566 Rru_A3567: Rru_A3567 - Uroporphyrinogen III synthase HEM4 (NCBI), at 4,111,106 to 4,113,310 _A3567 Rru_A3568: Rru_A3568 - Porphobilinogen deaminase (NCBI), at 4,113,345 to 4,114,310 _A3568 Position (kb) 4111 4112 4113 4114Strain fitness (log2 ratio) -1 0 1at 4110.200 kb on + strand, within Rru_A3566at 4110.201 kb on - strand, within Rru_A3566at 4110.588 kb on - strand, within Rru_A3566at 4111.430 kb on - strand, within Rru_A3567at 4113.299 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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4,110,200 + Rru_A3566 0.31 -0.6
4,110,201 - Rru_A3566 0.31 -0.0
4,110,588 - Rru_A3566 0.61 -0.0
4,111,430 - Rru_A3567 0.15 -0.0
4,113,299 - -0.4

Or see this region's nucleotide sequence