Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3530 and Rru_A3531 overlap by 40 nucleotides Rru_A3531 and Rru_A3532 are separated by 103 nucleotides Rru_A3532 and Rru_A3533 are separated by 36 nucleotides
Rru_A3530: Rru_A3530 - DNA-directed DNA polymerase (NCBI), at 4,061,767 to 4,063,032
_A3530
Rru_A3531: Rru_A3531 - Nitrogen-fixing NifU-like (NCBI), at 4,062,993 to 4,063,544
_A3531
Rru_A3532: Rru_A3532 - UspA (NCBI), at 4,063,648 to 4,064,205
_A3532
Rru_A3533: Rru_A3533 - hypothetical protein (NCBI), at 4,064,242 to 4,065,228
_A3533
Position (kb)
4063
4064
4065 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 4062.917 kb on + strand at 4062.917 kb on + strand at 4062.917 kb on + strand at 4062.918 kb on - strand at 4062.918 kb on - strand at 4062.918 kb on - strand at 4062.918 kb on - strand at 4062.918 kb on - strand at 4063.559 kb on - strand at 4063.665 kb on + strand at 4063.859 kb on + strand, within Rru_A3532 at 4063.859 kb on + strand, within Rru_A3532 at 4063.859 kb on + strand, within Rru_A3532 at 4063.859 kb on + strand, within Rru_A3532 at 4063.859 kb on + strand, within Rru_A3532 at 4063.859 kb on + strand, within Rru_A3532 at 4063.860 kb on - strand, within Rru_A3532 at 4063.860 kb on - strand, within Rru_A3532 at 4063.860 kb on - strand, within Rru_A3532 at 4063.860 kb on - strand, within Rru_A3532 at 4063.860 kb on - strand, within Rru_A3532 at 4063.860 kb on - strand, within Rru_A3532 at 4063.860 kb on - strand, within Rru_A3532 at 4064.048 kb on + strand, within Rru_A3532 at 4064.049 kb on - strand, within Rru_A3532 at 4064.049 kb on - strand, within Rru_A3532 at 4064.049 kb on - strand, within Rru_A3532 at 4064.205 kb on + strand at 4064.205 kb on + strand at 4064.206 kb on - strand at 4064.206 kb on - strand at 4064.206 kb on - strand at 4064.206 kb on - strand at 4064.312 kb on + strand at 4064.313 kb on - strand at 4064.313 kb on - strand at 4064.423 kb on + strand, within Rru_A3533 at 4064.423 kb on + strand, within Rru_A3533 at 4064.424 kb on - strand, within Rru_A3533 at 4064.424 kb on - strand, within Rru_A3533 at 4064.424 kb on - strand, within Rru_A3533 at 4064.424 kb on - strand, within Rru_A3533 at 4064.438 kb on + strand, within Rru_A3533 at 4064.438 kb on + strand, within Rru_A3533 at 4064.438 kb on + strand, within Rru_A3533 at 4064.439 kb on - strand, within Rru_A3533 at 4064.439 kb on - strand, within Rru_A3533 at 4064.439 kb on - strand, within Rru_A3533 at 4064.470 kb on + strand, within Rru_A3533 at 4064.470 kb on + strand, within Rru_A3533 at 4064.470 kb on + strand, within Rru_A3533 at 4064.470 kb on + strand, within Rru_A3533 at 4064.471 kb on - strand, within Rru_A3533 at 4064.471 kb on - strand, within Rru_A3533 at 4064.552 kb on + strand, within Rru_A3533 at 4064.553 kb on - strand, within Rru_A3533 at 4064.619 kb on - strand, within Rru_A3533 at 4064.619 kb on - strand, within Rru_A3533 at 4064.651 kb on + strand, within Rru_A3533 at 4064.651 kb on + strand, within Rru_A3533 at 4064.652 kb on - strand, within Rru_A3533 at 4064.652 kb on - strand, within Rru_A3533 at 4064.729 kb on + strand, within Rru_A3533 at 4064.791 kb on - strand, within Rru_A3533 at 4065.069 kb on + strand, within Rru_A3533 at 4065.069 kb on + strand, within Rru_A3533
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 4,062,917 + -0.0 4,062,917 + +1.6 4,062,917 + +1.6 4,062,918 - +0.4 4,062,918 - +0.9 4,062,918 - +2.6 4,062,918 - +1.0 4,062,918 - +0.5 4,063,559 - -0.0 4,063,665 + -0.6 4,063,859 + Rru_A3532 0.38 +0.8 4,063,859 + Rru_A3532 0.38 +2.2 4,063,859 + Rru_A3532 0.38 -1.0 4,063,859 + Rru_A3532 0.38 +1.6 4,063,859 + Rru_A3532 0.38 -0.0 4,063,859 + Rru_A3532 0.38 -0.0 4,063,860 - Rru_A3532 0.38 +2.5 4,063,860 - Rru_A3532 0.38 +1.1 4,063,860 - Rru_A3532 0.38 +2.4 4,063,860 - Rru_A3532 0.38 +2.0 4,063,860 - Rru_A3532 0.38 +2.0 4,063,860 - Rru_A3532 0.38 +2.2 4,063,860 - Rru_A3532 0.38 +2.9 4,064,048 + Rru_A3532 0.72 -0.0 4,064,049 - Rru_A3532 0.72 -0.0 4,064,049 - Rru_A3532 0.72 +1.2 4,064,049 - Rru_A3532 0.72 +2.0 4,064,205 + +2.1 4,064,205 + -0.0 4,064,206 - -0.0 4,064,206 - +2.3 4,064,206 - +0.9 4,064,206 - +4.4 4,064,312 + -0.0 4,064,313 - -0.0 4,064,313 - -0.0 4,064,423 + Rru_A3533 0.18 -0.0 4,064,423 + Rru_A3533 0.18 +1.2 4,064,424 - Rru_A3533 0.18 -0.0 4,064,424 - Rru_A3533 0.18 -0.0 4,064,424 - Rru_A3533 0.18 -0.0 4,064,424 - Rru_A3533 0.18 -0.0 4,064,438 + Rru_A3533 0.20 -0.0 4,064,438 + Rru_A3533 0.20 -0.0 4,064,438 + Rru_A3533 0.20 -0.0 4,064,439 - Rru_A3533 0.20 -0.0 4,064,439 - Rru_A3533 0.20 -0.0 4,064,439 - Rru_A3533 0.20 -0.0 4,064,470 + Rru_A3533 0.23 -0.0 4,064,470 + Rru_A3533 0.23 -0.0 4,064,470 + Rru_A3533 0.23 -0.0 4,064,470 + Rru_A3533 0.23 -0.0 4,064,471 - Rru_A3533 0.23 -0.0 4,064,471 - Rru_A3533 0.23 -0.0 4,064,552 + Rru_A3533 0.31 -1.0 4,064,553 - Rru_A3533 0.32 -1.0 4,064,619 - Rru_A3533 0.38 -0.0 4,064,619 - Rru_A3533 0.38 -0.0 4,064,651 + Rru_A3533 0.41 -0.0 4,064,651 + Rru_A3533 0.41 +1.6 4,064,652 - Rru_A3533 0.42 -0.0 4,064,652 - Rru_A3533 0.42 -0.0 4,064,729 + Rru_A3533 0.49 -1.0 4,064,791 - Rru_A3533 0.56 -0.0 4,065,069 + Rru_A3533 0.84 -0.0 4,065,069 + Rru_A3533 0.84 -0.0
Or see this region's nucleotide sequence