Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3465

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
3,988,867	+		Rru_A3463	0.48	+2.0
3,988,867	+		Rru_A3463	0.48	+0.3
3,988,868	-		Rru_A3463	0.49	+0.0
3,988,871	+		Rru_A3463	0.50	+0.6
3,988,872	-		Rru_A3463	0.50	+1.3
3,988,872	-		Rru_A3463	0.50	+1.6
3,988,874	+		Rru_A3463	0.51	+0.4
3,988,887	+		Rru_A3463	0.55	+0.0
3,988,887	+		Rru_A3463	0.55	+1.7
3,988,887	+		Rru_A3463	0.55	+1.1
3,988,888	-		Rru_A3463	0.56	+1.6
3,988,908	+		Rru_A3463	0.62	+0.0
3,989,022	-				+1.0
3,989,038	-				+0.0
3,989,091	+				+0.9
3,989,092	-				+1.3
3,989,118	+				+1.4
3,989,129	+				-1.3
3,989,130	-				+1.0
3,989,220	+				+2.5
3,989,245	+				+1.7
3,989,245	+				+0.5
3,989,317	-				+0.0
3,989,334	-				+2.0
3,989,463	+		Rru_A3464	0.31	+0.0
3,989,467	-		Rru_A3464	0.31	+0.6
3,989,468	+		Rru_A3464	0.32	+0.8
3,989,556	+		Rru_A3464	0.48	+0.6
3,989,685	-		Rru_A3464	0.73	-1.7
3,989,685	-		Rru_A3464	0.73	-1.6
3,989,696	-		Rru_A3464	0.75	+0.0
3,989,800	+				+1.4
3,989,800	+				+0.0
3,989,800	+				+1.1
3,989,824	+				+1.1
3,989,849	-				+1.5
3,989,965	+				+1.3
3,989,965	+				+0.0
3,989,966	-				+1.6
3,990,077	+		Rru_A3465	0.19	+0.8
3,990,077	+		Rru_A3465	0.19	+0.0
3,990,077	+		Rru_A3465	0.19	+1.0
3,990,077	+		Rru_A3465	0.19	+0.4
3,990,078	-		Rru_A3465	0.19	+0.0
3,990,078	-		Rru_A3465	0.19	+0.0
3,990,082	+		Rru_A3465	0.19	+0.0
3,990,082	+		Rru_A3465	0.19	+1.7
3,990,082	+		Rru_A3465	0.19	+0.0
3,990,082	+		Rru_A3465	0.19	+0.0
3,990,082	+		Rru_A3465	0.19	+2.5
3,990,082	+		Rru_A3465	0.19	+0.3
3,990,083	-		Rru_A3465	0.19	+0.9
3,990,161	+		Rru_A3465	0.25	+1.5
3,990,161	+		Rru_A3465	0.25	+0.1
3,990,161	+		Rru_A3465	0.25	+0.0
3,990,161	+		Rru_A3465	0.25	+0.9
3,990,162	-		Rru_A3465	0.25	+0.6
3,990,162	-		Rru_A3465	0.25	+2.5
3,990,165	-		Rru_A3465	0.26	+0.8
3,990,210	-		Rru_A3465	0.29	+0.6
3,991,174	-				+0.8
3,991,174	-				+0.0
3,991,445	-		Rru_A3466	0.20	+1.0
3,991,445	-		Rru_A3466	0.20	+0.6
3,991,445	-		Rru_A3466	0.20	+0.0
3,991,445	-		Rru_A3466	0.20	+1.1
3,991,475	+		Rru_A3466	0.22	+0.4
3,991,476	-		Rru_A3466	0.22	+0.6
3,991,476	-		Rru_A3466	0.22	-1.0
3,991,613	-		Rru_A3466	0.33	+0.7
3,991,749	-		Rru_A3466	0.44	+0.1
3,991,749	-		Rru_A3466	0.44	+0.0
3,991,749	-		Rru_A3466	0.44	+0.0
3,991,749	-		Rru_A3466	0.44	-0.2
3,991,749	-		Rru_A3466	0.44	+0.7
3,991,774	+		Rru_A3466	0.46	+0.8
3,991,774	+		Rru_A3466	0.46	+1.5