Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3439 and Rru_A3440 are separated by 25 nucleotides Rru_A3440 and Rru_A3441 are separated by 14 nucleotides Rru_A3441 and Rru_A3442 are separated by 369 nucleotides
Rru_A3439: Rru_A3439 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (NCBI), at 3,961,453 to 3,962,490
_A3439
Rru_A3440: Rru_A3440 - hypothetical protein (NCBI), at 3,962,516 to 3,962,698
_A3440
Rru_A3441: Rru_A3441 - Transcriptional Regulator, PadR-like family (NCBI), at 3,962,713 to 3,963,327
_A3441
Rru_A3442: Rru_A3442 - Transposase IS116/IS110/IS902 (NCBI), at 3,963,697 to 3,964,728
_A3442
Position (kb)
3962
3963
3964 Strain fitness (log2 ratio)
-1
0
1
2 at 3963.000 kb on - strand, within Rru_A3441 at 3963.033 kb on - strand, within Rru_A3441 at 3963.055 kb on - strand, within Rru_A3441 at 3963.057 kb on - strand, within Rru_A3441 at 3963.099 kb on - strand, within Rru_A3441 at 3963.327 kb on + strand at 3963.327 kb on + strand at 3963.328 kb on - strand at 3963.328 kb on - strand at 3963.370 kb on + strand at 3963.438 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 3,963,000 - Rru_A3441 0.47 +2.2 3,963,033 - Rru_A3441 0.52 +0.5 3,963,055 - Rru_A3441 0.56 +1.1 3,963,057 - Rru_A3441 0.56 +1.5 3,963,099 - Rru_A3441 0.63 +2.2 3,963,327 + +0.3 3,963,327 + +0.5 3,963,328 - -0.2 3,963,328 - +0.0 3,963,370 + +0.0 3,963,438 - +0.0
Or see this region's nucleotide sequence