Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3395

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3393 and Rru_A3394 are separated by 21 nucleotidesRru_A3394 and Rru_A3395 are separated by 79 nucleotidesRru_A3395 and Rru_A3396 are separated by 153 nucleotidesRru_A3396 and Rru_A3397 overlap by 1 nucleotides Rru_A3393: Rru_A3393 - Penicillin-binding protein 1A (NCBI), at 3,910,206 to 3,912,161 _A3393 Rru_A3394: Rru_A3394 - hypothetical protein (NCBI), at 3,912,183 to 3,912,512 _A3394 Rru_A3395: Rru_A3395 - Transcriptional Regulator, LuxR family (NCBI), at 3,912,592 to 3,913,374 _A3395 Rru_A3396: Rru_A3396 - Autoinducer synthesis protein (NCBI), at 3,913,528 to 3,914,148 _A3396 Rru_A3397: Rru_A3397 - hypothetical protein (NCBI), at 3,914,148 to 3,914,399 _A3397 Position (kb) 3912 3913 3914Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3911.631 kb on - strand, within Rru_A3393at 3911.779 kb on - strand, within Rru_A3393at 3911.860 kb on - strand, within Rru_A3393at 3912.040 kb on - strandat 3912.453 kb on - strand, within Rru_A3394at 3912.453 kb on - strand, within Rru_A3394at 3912.570 kb on - strandat 3912.570 kb on - strandat 3912.570 kb on - strandat 3912.570 kb on - strandat 3912.570 kb on - strandat 3912.612 kb on + strandat 3912.613 kb on - strandat 3912.629 kb on + strandat 3912.629 kb on + strandat 3912.629 kb on + strandat 3912.629 kb on + strandat 3912.675 kb on - strand, within Rru_A3395at 3912.675 kb on - strand, within Rru_A3395at 3912.675 kb on - strand, within Rru_A3395at 3912.718 kb on + strand, within Rru_A3395at 3912.719 kb on - strand, within Rru_A3395at 3912.719 kb on - strand, within Rru_A3395at 3912.719 kb on - strand, within Rru_A3395at 3912.760 kb on + strand, within Rru_A3395at 3912.760 kb on + strand, within Rru_A3395at 3912.761 kb on - strand, within Rru_A3395at 3912.761 kb on - strand, within Rru_A3395at 3912.761 kb on - strand, within Rru_A3395at 3912.761 kb on - strand, within Rru_A3395at 3912.775 kb on + strand, within Rru_A3395at 3912.775 kb on + strand, within Rru_A3395at 3912.775 kb on + strand, within Rru_A3395at 3912.775 kb on + strand, within Rru_A3395at 3912.776 kb on - strand, within Rru_A3395at 3912.776 kb on - strand, within Rru_A3395at 3912.799 kb on + strand, within Rru_A3395at 3912.799 kb on + strand, within Rru_A3395at 3912.800 kb on - strand, within Rru_A3395at 3912.800 kb on - strand, within Rru_A3395at 3913.084 kb on + strand, within Rru_A3395at 3913.084 kb on + strand, within Rru_A3395at 3913.084 kb on + strand, within Rru_A3395at 3913.085 kb on - strand, within Rru_A3395at 3913.288 kb on + strand, within Rru_A3395at 3913.289 kb on - strand, within Rru_A3395at 3913.289 kb on - strand, within Rru_A3395at 3913.289 kb on - strand, within Rru_A3395at 3913.289 kb on - strand, within Rru_A3395at 3913.372 kb on + strandat 3913.375 kb on + strandat 3913.375 kb on + strandat 3913.376 kb on - strandat 3913.376 kb on - strandat 3913.411 kb on + strandat 3913.412 kb on - strandat 3913.487 kb on + strandat 3913.500 kb on - strandat 3913.687 kb on + strand, within Rru_A3396at 3913.687 kb on + strand, within Rru_A3396at 3913.687 kb on + strand, within Rru_A3396at 3913.687 kb on + strand, within Rru_A3396at 3913.687 kb on + strand, within Rru_A3396at 3913.688 kb on - strand, within Rru_A3396at 3913.688 kb on - strand, within Rru_A3396at 3913.689 kb on + strand, within Rru_A3396at 3913.689 kb on + strand, within Rru_A3396at 3913.690 kb on - strand, within Rru_A3396at 3913.743 kb on + strand, within Rru_A3396at 3913.743 kb on + strand, within Rru_A3396at 3913.858 kb on + strand, within Rru_A3396at 3913.858 kb on + strand, within Rru_A3396at 3913.859 kb on - strand, within Rru_A3396at 3913.859 kb on - strand, within Rru_A3396at 3913.859 kb on - strand, within Rru_A3396at 3913.912 kb on + strand, within Rru_A3396at 3913.912 kb on + strand, within Rru_A3396at 3913.913 kb on - strand, within Rru_A3396at 3913.939 kb on + strand, within Rru_A3396at 3913.940 kb on - strand, within Rru_A3396at 3913.940 kb on - strand, within Rru_A3396at 3914.157 kb on + strandat 3914.265 kb on + strand, within Rru_A3397at 3914.265 kb on + strand, within Rru_A3397at 3914.266 kb on - strand, within Rru_A3397

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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3,911,631 - Rru_A3393 0.73 -1.6
3,911,779 - Rru_A3393 0.80 +0.0
3,911,860 - Rru_A3393 0.85 +0.0
3,912,040 - +0.0
3,912,453 - Rru_A3394 0.82 +0.0
3,912,453 - Rru_A3394 0.82 +0.0
3,912,570 - +0.5
3,912,570 - +0.0
3,912,570 - +0.0
3,912,570 - +0.4
3,912,570 - +0.2
3,912,612 + -2.0
3,912,613 - +0.0
3,912,629 + +0.0
3,912,629 + -2.0
3,912,629 + +0.0
3,912,629 + -1.0
3,912,675 - Rru_A3395 0.11 +0.7
3,912,675 - Rru_A3395 0.11 +0.0
3,912,675 - Rru_A3395 0.11 +0.0
3,912,718 + Rru_A3395 0.16 +0.0
3,912,719 - Rru_A3395 0.16 +0.6
3,912,719 - Rru_A3395 0.16 -3.2
3,912,719 - Rru_A3395 0.16 -2.8
3,912,760 + Rru_A3395 0.21 +3.6
3,912,760 + Rru_A3395 0.21 +0.0
3,912,761 - Rru_A3395 0.22 -2.6
3,912,761 - Rru_A3395 0.22 -2.0
3,912,761 - Rru_A3395 0.22 +0.0
3,912,761 - Rru_A3395 0.22 +1.9
3,912,775 + Rru_A3395 0.23 +2.6
3,912,775 + Rru_A3395 0.23 +0.6
3,912,775 + Rru_A3395 0.23 +0.0
3,912,775 + Rru_A3395 0.23 +0.3
3,912,776 - Rru_A3395 0.23 -0.4
3,912,776 - Rru_A3395 0.23 -2.0
3,912,799 + Rru_A3395 0.26 +0.8
3,912,799 + Rru_A3395 0.26 +0.9
3,912,800 - Rru_A3395 0.27 +0.6
3,912,800 - Rru_A3395 0.27 -0.7
3,913,084 + Rru_A3395 0.63 +0.0
3,913,084 + Rru_A3395 0.63 +0.0
3,913,084 + Rru_A3395 0.63 +0.9
3,913,085 - Rru_A3395 0.63 +2.1
3,913,288 + Rru_A3395 0.89 +1.0
3,913,289 - Rru_A3395 0.89 -0.3
3,913,289 - Rru_A3395 0.89 +0.0
3,913,289 - Rru_A3395 0.89 -0.3
3,913,289 - Rru_A3395 0.89 -1.0
3,913,372 + +2.5
3,913,375 + +0.9
3,913,375 + +1.4
3,913,376 - -1.0
3,913,376 - +1.1
3,913,411 + +0.8
3,913,412 - +0.2
3,913,487 + +0.0
3,913,500 - +0.5
3,913,687 + Rru_A3396 0.26 +0.0
3,913,687 + Rru_A3396 0.26 +0.0
3,913,687 + Rru_A3396 0.26 +0.3
3,913,687 + Rru_A3396 0.26 +0.7
3,913,687 + Rru_A3396 0.26 +0.6
3,913,688 - Rru_A3396 0.26 +0.0
3,913,688 - Rru_A3396 0.26 +0.0
3,913,689 + Rru_A3396 0.26 +0.0
3,913,689 + Rru_A3396 0.26 +1.6
3,913,690 - Rru_A3396 0.26 +1.3
3,913,743 + Rru_A3396 0.35 +1.7
3,913,743 + Rru_A3396 0.35 +1.0
3,913,858 + Rru_A3396 0.53 +0.0
3,913,858 + Rru_A3396 0.53 +1.6
3,913,859 - Rru_A3396 0.53 +0.0
3,913,859 - Rru_A3396 0.53 -0.4
3,913,859 - Rru_A3396 0.53 -1.6
3,913,912 + Rru_A3396 0.62 +1.7
3,913,912 + Rru_A3396 0.62 +0.0
3,913,913 - Rru_A3396 0.62 +0.0
3,913,939 + Rru_A3396 0.66 +0.0
3,913,940 - Rru_A3396 0.66 +0.0
3,913,940 - Rru_A3396 0.66 -1.0
3,914,157 + +0.0
3,914,265 + Rru_A3397 0.46 -1.0
3,914,265 + Rru_A3397 0.46 +0.0
3,914,266 - Rru_A3397 0.47 +0.0

Or see this region's nucleotide sequence