Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3386
Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Succinic Acid; Light intensity 9 uM |
|---|---|---|---|---|---|
| remove | |||||
| 3,902,429 | - | Rru_A3385 | 0.19 | +0.0 | |
| 3,902,429 | - | Rru_A3385 | 0.19 | +0.0 | |
| 3,902,476 | + | Rru_A3385 | 0.25 | -0.1 | |
| 3,902,477 | - | Rru_A3385 | 0.25 | +0.0 | |
| 3,903,017 | + | +0.7 | |||
| 3,903,017 | + | +0.9 | |||
| 3,903,017 | + | -1.0 | |||
| 3,903,017 | + | +0.0 | |||
| 3,903,017 | + | +1.1 | |||
| 3,903,018 | - | +1.5 | |||
| 3,903,018 | - | +1.2 | |||
| 3,903,468 | + | Rru_A3386 | 0.35 | +0.0 | |
| 3,903,659 | + | Rru_A3386 | 0.70 | +0.3 | |
| 3,903,659 | + | Rru_A3386 | 0.70 | -1.6 | |
| 3,903,660 | - | Rru_A3386 | 0.70 | +0.0 | |
| 3,903,678 | - | Rru_A3386 | 0.73 | +0.0 |
Or see this region's nucleotide sequence