Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3300

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
3,796,598	+		Rru_A3299	0.64	+1.7
3,796,599	-		Rru_A3299	0.64	+0.0
3,796,599	-		Rru_A3299	0.64	+1.0
3,796,755	-		Rru_A3299	0.71	+0.0
3,796,755	-		Rru_A3299	0.71	+0.0
3,797,004	+		Rru_A3299	0.83	+0.0
3,797,004	+		Rru_A3299	0.83	+0.0
3,797,004	+		Rru_A3299	0.83	+0.3
3,797,004	+		Rru_A3299	0.83	+0.0
3,797,005	-		Rru_A3299	0.83	+0.0
3,797,005	-		Rru_A3299	0.83	+0.9
3,797,005	-		Rru_A3299	0.83	+0.1
3,797,005	-		Rru_A3299	0.83	+1.6
3,797,356	-				+0.5
3,797,356	-				+0.0
3,797,410	-				+0.5
3,797,418	-				+0.0
3,797,437	+				+0.4
3,797,437	+				+0.0
3,797,437	+				+2.4
3,797,437	+				+0.0
3,797,438	-				+1.2
3,797,438	-				+0.8
3,797,772	+		Rru_A3300	0.12	+1.4
3,798,042	-		Rru_A3300	0.27	+1.0
3,798,042	-		Rru_A3300	0.27	+0.8
3,798,042	-		Rru_A3300	0.27	-0.2
3,798,112	-		Rru_A3300	0.30	+0.9
3,798,142	+		Rru_A3300	0.32	+0.7
3,798,143	-		Rru_A3300	0.32	+0.6
3,798,144	+		Rru_A3300	0.32	+0.7
3,798,144	+		Rru_A3300	0.32	+1.0
3,798,144	+		Rru_A3300	0.32	+0.0
3,798,144	+		Rru_A3300	0.32	+0.0
3,798,144	+		Rru_A3300	0.32	+0.0
3,798,144	+		Rru_A3300	0.32	+0.0
3,798,144	+		Rru_A3300	0.32	+0.0
3,798,144	+		Rru_A3300	0.32	-1.0
3,798,145	-		Rru_A3300	0.32	+0.0
3,798,145	-		Rru_A3300	0.32	+1.2
3,798,145	-		Rru_A3300	0.32	+2.6
3,798,145	-		Rru_A3300	0.32	+0.0
3,798,145	-		Rru_A3300	0.32	+1.0
3,798,145	-		Rru_A3300	0.32	+0.5
3,798,221	+		Rru_A3300	0.36	-1.6
3,798,222	-		Rru_A3300	0.36	+1.5
3,798,285	+		Rru_A3300	0.39	+0.0
3,798,285	+		Rru_A3300	0.39	+1.7
3,798,285	+		Rru_A3300	0.39	+0.0
3,798,285	+		Rru_A3300	0.39	-0.8
3,798,285	+		Rru_A3300	0.39	+0.0
3,798,286	-		Rru_A3300	0.40	+3.5
3,798,286	-		Rru_A3300	0.40	+0.0
3,798,286	-		Rru_A3300	0.40	+0.7
3,798,286	-		Rru_A3300	0.40	+3.6
3,798,286	-		Rru_A3300	0.40	+2.4
3,798,286	-		Rru_A3300	0.40	+1.4
3,798,286	-		Rru_A3300	0.40	+0.7
3,798,286	-		Rru_A3300	0.40	+1.6
3,798,286	-		Rru_A3300	0.40	+1.2
3,798,286	-		Rru_A3300	0.40	+0.0
3,798,931	+		Rru_A3300	0.74	+0.0
3,798,931	+		Rru_A3300	0.74	+1.7
3,798,931	+		Rru_A3300	0.74	+0.8
3,798,931	+		Rru_A3300	0.74	+0.9
3,798,932	-		Rru_A3300	0.74	+0.0
3,799,424	+				+0.0
3,799,424	+				+1.4
3,799,560	-		Rru_A3301	0.11	+1.1
3,799,846	-		Rru_A3301	0.33	+0.9
3,799,902	+		Rru_A3301	0.37	+1.3
3,799,902	+		Rru_A3301	0.37	+3.5
3,799,903	-		Rru_A3301	0.37	+3.6
3,799,903	-		Rru_A3301	0.37	+0.0
3,799,903	-		Rru_A3301	0.37	+0.2
3,799,926	+		Rru_A3301	0.39	+1.2
3,799,927	-		Rru_A3301	0.39	+0.0
3,799,927	-		Rru_A3301	0.39	+1.0
3,799,927	-		Rru_A3301	0.39	-1.0
3,799,927	-		Rru_A3301	0.39	+1.0
3,799,927	-		Rru_A3301	0.39	+0.6
3,799,950	+		Rru_A3301	0.41	+2.4
3,799,950	+		Rru_A3301	0.41	+1.5
3,799,951	-		Rru_A3301	0.41	+1.3
3,799,951	-		Rru_A3301	0.41	+0.0
3,799,951	-		Rru_A3301	0.41	+1.1
3,799,951	-		Rru_A3301	0.41	+0.0
3,800,025	+		Rru_A3301	0.47	+0.0
3,800,025	+		Rru_A3301	0.47	+2.4
3,800,025	+		Rru_A3301	0.47	+0.0
3,800,026	-		Rru_A3301	0.47	+0.8
3,800,026	-		Rru_A3301	0.47	+1.2
3,800,073	+		Rru_A3301	0.51	+0.0
3,800,073	+		Rru_A3301	0.51	+1.3
3,800,073	+		Rru_A3301	0.51	+1.5
3,800,074	-		Rru_A3301	0.51	+1.0
3,800,181	+		Rru_A3301	0.59	+3.6
3,800,182	-		Rru_A3301	0.59	+1.9
3,800,182	-		Rru_A3301	0.59	+0.6
3,800,224	-		Rru_A3301	0.63	+1.2
3,800,232	+		Rru_A3301	0.63	+0.5
3,800,255	+		Rru_A3301	0.65	-1.0
3,800,256	-		Rru_A3301	0.65	-1.6
3,800,256	-		Rru_A3301	0.65	+0.0
3,800,268	+		Rru_A3301	0.66	+0.6
3,800,268	+		Rru_A3301	0.66	+0.0
3,800,308	-		Rru_A3301	0.69	+1.3
3,800,355	+		Rru_A3301	0.73	+0.0
3,800,425	-		Rru_A3301	0.78	+3.4
3,800,425	-		Rru_A3301	0.78	+1.5
3,800,425	-		Rru_A3301	0.78	+4.0