Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3267 and Rru_A3268 overlap by 4 nucleotides Rru_A3268 and Rru_A3269 overlap by 23 nucleotides Rru_A3269 and Rru_A3270 are separated by 147 nucleotides Rru_A3270 and Rru_A3271 are separated by 2 nucleotides
Rru_A3267: Rru_A3267 - Methionine biosynthesis MetW (NCBI), at 3,766,410 to 3,767,045
_A3267
Rru_A3268: Rru_A3268 - hypothetical protein (NCBI), at 3,767,042 to 3,767,668
_A3268
Rru_A3269: Rru_A3269 - hypothetical protein (NCBI), at 3,767,646 to 3,768,440
_A3269
Rru_A3270: Rru_A3270 - Hydroxyacylglutathione hydrolase (NCBI), at 3,768,588 to 3,769,358
_A3270
Rru_A3271: Rru_A3271 - glutathione S-transferase family protein (NCBI), at 3,769,361 to 3,769,999
_A3271
Position (kb) 3767
3768
3769 Strain fitness (log2 ratio) -1
0
1
2 at 3766.671 kb on + strand, within Rru_A3267 at 3766.671 kb on + strand, within Rru_A3267 at 3766.671 kb on + strand, within Rru_A3267 at 3766.671 kb on + strand, within Rru_A3267 at 3766.833 kb on + strand, within Rru_A3267 at 3766.842 kb on + strand, within Rru_A3267 at 3766.843 kb on - strand, within Rru_A3267 at 3767.366 kb on + strand, within Rru_A3268 at 3767.406 kb on - strand, within Rru_A3268 at 3767.737 kb on + strand, within Rru_A3269 at 3767.737 kb on + strand, within Rru_A3269 at 3767.737 kb on + strand, within Rru_A3269 at 3767.738 kb on - strand, within Rru_A3269 at 3767.763 kb on - strand, within Rru_A3269 at 3768.371 kb on + strand at 3768.395 kb on - strand at 3768.404 kb on + strand at 3768.440 kb on + strand at 3768.440 kb on + strand at 3768.440 kb on + strand at 3768.440 kb on + strand at 3768.441 kb on - strand at 3768.441 kb on - strand at 3768.441 kb on - strand at 3768.441 kb on - strand at 3768.441 kb on - strand at 3768.441 kb on - strand at 3768.633 kb on + strand at 3768.633 kb on + strand at 3768.633 kb on + strand at 3768.633 kb on + strand at 3768.633 kb on + strand at 3768.633 kb on + strand at 3768.633 kb on + strand at 3768.633 kb on + strand at 3768.633 kb on + strand at 3768.634 kb on - strand at 3768.634 kb on - strand at 3768.634 kb on - strand at 3768.634 kb on - strand at 3768.634 kb on - strand at 3768.634 kb on - strand at 3768.634 kb on - strand at 3768.634 kb on - strand at 3768.634 kb on - strand at 3768.634 kb on - strand at 3768.634 kb on - strand at 3768.634 kb on - strand at 3768.634 kb on - strand at 3768.634 kb on - strand at 3768.634 kb on - strand at 3768.634 kb on - strand at 3768.639 kb on + strand at 3768.639 kb on + strand at 3768.639 kb on + strand at 3768.639 kb on + strand at 3768.640 kb on - strand at 3768.640 kb on - strand at 3768.743 kb on + strand, within Rru_A3270 at 3768.744 kb on - strand, within Rru_A3270 at 3768.765 kb on + strand, within Rru_A3270 at 3768.766 kb on - strand, within Rru_A3270 at 3768.766 kb on - strand, within Rru_A3270 at 3769.107 kb on + strand, within Rru_A3270 at 3769.107 kb on + strand, within Rru_A3270 at 3769.107 kb on + strand, within Rru_A3270 at 3769.107 kb on + strand, within Rru_A3270 at 3769.108 kb on - strand, within Rru_A3270 at 3769.108 kb on - strand, within Rru_A3270 at 3769.109 kb on + strand, within Rru_A3270 at 3769.110 kb on - strand, within Rru_A3270 at 3769.110 kb on - strand, within Rru_A3270 at 3769.110 kb on - strand, within Rru_A3270
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 3,766,671 + Rru_A3267 0.41 +0.0 3,766,671 + Rru_A3267 0.41 -0.2 3,766,671 + Rru_A3267 0.41 -0.2 3,766,671 + Rru_A3267 0.41 -0.3 3,766,833 + Rru_A3267 0.67 -0.2 3,766,842 + Rru_A3267 0.68 +0.0 3,766,843 - Rru_A3267 0.68 +0.0 3,767,366 + Rru_A3268 0.52 +0.7 3,767,406 - Rru_A3268 0.58 +0.0 3,767,737 + Rru_A3269 0.11 +2.5 3,767,737 + Rru_A3269 0.11 +1.9 3,767,737 + Rru_A3269 0.11 +2.0 3,767,738 - Rru_A3269 0.12 +1.2 3,767,763 - Rru_A3269 0.15 +0.0 3,768,371 + +2.0 3,768,395 - +0.8 3,768,404 + +1.2 3,768,440 + +0.0 3,768,440 + +0.0 3,768,440 + +1.5 3,768,440 + +1.9 3,768,441 - +2.3 3,768,441 - +0.5 3,768,441 - +0.0 3,768,441 - +0.0 3,768,441 - +0.0 3,768,441 - +0.6 3,768,633 + +0.0 3,768,633 + +0.5 3,768,633 + +0.0 3,768,633 + +0.9 3,768,633 + +0.0 3,768,633 + +0.0 3,768,633 + +1.0 3,768,633 + +0.0 3,768,633 + +1.6 3,768,634 - +0.7 3,768,634 - -1.0 3,768,634 - -1.0 3,768,634 - +1.0 3,768,634 - +0.0 3,768,634 - +0.5 3,768,634 - +0.0 3,768,634 - +0.0 3,768,634 - +0.0 3,768,634 - +1.0 3,768,634 - +0.0 3,768,634 - -1.0 3,768,634 - +0.0 3,768,634 - +0.0 3,768,634 - +0.0 3,768,634 - +0.0 3,768,639 + +0.0 3,768,639 + +0.5 3,768,639 + +0.0 3,768,639 + -1.6 3,768,640 - +0.0 3,768,640 - +0.0 3,768,743 + Rru_A3270 0.20 +0.0 3,768,744 - Rru_A3270 0.20 +0.3 3,768,765 + Rru_A3270 0.23 +0.0 3,768,766 - Rru_A3270 0.23 +0.2 3,768,766 - Rru_A3270 0.23 +0.0 3,769,107 + Rru_A3270 0.67 +0.7 3,769,107 + Rru_A3270 0.67 -0.7 3,769,107 + Rru_A3270 0.67 +0.0 3,769,107 + Rru_A3270 0.67 +0.2 3,769,108 - Rru_A3270 0.67 -1.0 3,769,108 - Rru_A3270 0.67 +1.3 3,769,109 + Rru_A3270 0.68 -1.0 3,769,110 - Rru_A3270 0.68 +0.0 3,769,110 - Rru_A3270 0.68 +0.2 3,769,110 - Rru_A3270 0.68 +0.0
Or see this region's nucleotide sequence