Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3180

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
3,670,727	-				+1.2
3,670,847	-		Rru_A3179	0.19	-1.6
3,670,847	-		Rru_A3179	0.19	-0.1
3,670,847	-		Rru_A3179	0.19	+0.7
3,670,886	+		Rru_A3179	0.26	+1.3
3,670,886	+		Rru_A3179	0.26	+0.5
3,670,887	-		Rru_A3179	0.26	+1.5
3,671,068	+		Rru_A3179	0.55	+0.0
3,671,069	-		Rru_A3179	0.55	+1.7
3,671,069	-		Rru_A3179	0.55	+0.8
3,671,069	-		Rru_A3179	0.55	+0.0
3,671,282	-		Rru_A3179	0.89	+0.0
3,671,351	+				+0.0
3,671,435	-				+0.6
3,671,458	+				+4.2
3,671,463	+				+0.9
3,671,463	+				+1.0
3,671,464	-				+1.4
3,671,465	+				+0.0
3,671,466	-				+0.0
3,671,549	+				+0.0
3,671,550	-				+1.0
3,671,550	-				+1.6
3,671,550	-				+0.6
3,671,717	+		Rru_A3180	0.12	+0.0
3,671,717	+		Rru_A3180	0.12	+1.0
3,671,718	-		Rru_A3180	0.12	+1.4
3,671,718	-		Rru_A3180	0.12	-0.1
3,671,760	+		Rru_A3180	0.15	-1.0
3,671,761	-		Rru_A3180	0.15	+1.4
3,671,761	-		Rru_A3180	0.15	+0.0
3,671,890	-		Rru_A3180	0.26	+0.5
3,671,916	+		Rru_A3180	0.28	+1.5
3,671,917	-		Rru_A3180	0.28	+0.0
3,671,917	-		Rru_A3180	0.28	+1.0
3,671,994	-		Rru_A3180	0.35	+1.0
3,672,144	+		Rru_A3180	0.48	+0.0
3,672,144	+		Rru_A3180	0.48	+1.4
3,672,145	-		Rru_A3180	0.48	+2.8
3,672,145	-		Rru_A3180	0.48	+0.0
3,672,145	-		Rru_A3180	0.48	+1.2
3,672,145	-		Rru_A3180	0.48	+0.7
3,672,565	-		Rru_A3180	0.83	+1.1
3,672,566	+		Rru_A3180	0.83	+1.5
3,672,567	-		Rru_A3180	0.83	+1.9
3,672,567	-		Rru_A3180	0.83	+0.0
3,672,600	+		Rru_A3180	0.86	+1.1
3,672,601	-		Rru_A3180	0.86	+2.4
3,672,601	-		Rru_A3180	0.86	+0.0
3,672,760	+				+0.8
3,672,760	+				-0.1
3,672,761	-				-1.6
3,672,761	-				+1.5
3,672,761	-				+0.6
3,672,761	-				+0.8
3,672,977	+		Rru_A3181	0.54	+0.0
3,672,977	+		Rru_A3181	0.54	+0.0
3,672,977	+		Rru_A3181	0.54	-0.1
3,672,977	+		Rru_A3181	0.54	+0.5
3,672,978	-		Rru_A3181	0.54	+1.5
3,672,978	-		Rru_A3181	0.54	+0.3
3,672,978	-		Rru_A3181	0.54	+1.0
3,673,003	-		Rru_A3181	0.61	+0.2
3,673,060	+		Rru_A3181	0.78	+0.0
3,673,061	-		Rru_A3181	0.78	+0.9
3,673,061	-		Rru_A3181	0.78	+0.8
3,673,065	+		Rru_A3181	0.80	+0.0
3,673,065	+		Rru_A3181	0.80	+0.0
3,673,324	-				+0.3
3,673,418	+		Rru_A3182	0.13	+0.0
3,673,419	-		Rru_A3182	0.13	+1.8
3,673,419	-		Rru_A3182	0.13	+1.0
3,673,627	+		Rru_A3182	0.35	+0.5
3,673,627	+		Rru_A3182	0.35	+0.6
3,673,628	-		Rru_A3182	0.35	+0.3
3,673,628	-		Rru_A3182	0.35	+0.7
3,673,628	-		Rru_A3182	0.35	+1.0
3,673,628	-		Rru_A3182	0.35	+0.3
3,673,628	-		Rru_A3182	0.35	-1.0
3,673,628	-		Rru_A3182	0.35	+0.0
3,673,631	+		Rru_A3182	0.36	-0.6
3,673,631	+		Rru_A3182	0.36	-1.0
3,673,631	+		Rru_A3182	0.36	+1.0
3,673,631	+		Rru_A3182	0.36	+0.8
3,673,631	+		Rru_A3182	0.36	+1.0
3,673,632	-		Rru_A3182	0.36	+0.8
3,673,632	-		Rru_A3182	0.36	+0.0
3,673,632	-		Rru_A3182	0.36	-1.7
3,673,632	-		Rru_A3182	0.36	+1.3
3,673,632	-		Rru_A3182	0.36	+0.6
3,673,632	-		Rru_A3182	0.36	+0.0
3,673,632	-		Rru_A3182	0.36	+0.2
3,673,677	+		Rru_A3182	0.41	+1.2