Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3124

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3122 and Rru_A3123 are separated by 2 nucleotidesRru_A3123 and Rru_A3124 overlap by 4 nucleotidesRru_A3124 and Rru_A3125 overlap by 4 nucleotides Rru_A3122: Rru_A3122 - hypothetical protein (NCBI), at 3,602,103 to 3,602,387 _A3122 Rru_A3123: Rru_A3123 - esterase/lipase/thioesterase family active site (NCBI), at 3,602,390 to 3,603,160 _A3123 Rru_A3124: Rru_A3124 - Alpha/beta hydrolase fold (NCBI), at 3,603,157 to 3,603,999 _A3124 Rru_A3125: Rru_A3125 - Glycosyl transferase, group 1 (NCBI), at 3,603,996 to 3,605,216 _A3125 Position (kb) 3603 3604Strain fitness (log2 ratio) -1 0 1 2at 3602.480 kb on + strand, within Rru_A3123at 3602.480 kb on + strand, within Rru_A3123at 3602.481 kb on - strand, within Rru_A3123at 3602.533 kb on - strand, within Rru_A3123at 3602.828 kb on - strand, within Rru_A3123at 3602.828 kb on - strand, within Rru_A3123at 3602.828 kb on - strand, within Rru_A3123at 3603.153 kb on + strandat 3603.153 kb on + strandat 3603.506 kb on + strand, within Rru_A3124at 3603.506 kb on + strand, within Rru_A3124at 3603.622 kb on + strand, within Rru_A3124at 3603.622 kb on + strand, within Rru_A3124at 3603.623 kb on - strand, within Rru_A3124at 3603.625 kb on + strand, within Rru_A3124at 3603.625 kb on + strand, within Rru_A3124at 3603.625 kb on + strand, within Rru_A3124at 3603.626 kb on - strand, within Rru_A3124at 3603.818 kb on + strand, within Rru_A3124at 3603.819 kb on - strand, within Rru_A3124at 3603.819 kb on - strand, within Rru_A3124at 3604.031 kb on - strandat 3604.297 kb on + strand, within Rru_A3125at 3604.618 kb on + strand, within Rru_A3125at 3604.618 kb on + strand, within Rru_A3125at 3604.618 kb on + strand, within Rru_A3125at 3604.619 kb on - strand, within Rru_A3125at 3604.708 kb on + strand, within Rru_A3125at 3604.708 kb on + strand, within Rru_A3125at 3604.708 kb on + strand, within Rru_A3125at 3604.709 kb on - strand, within Rru_A3125at 3604.709 kb on - strand, within Rru_A3125at 3604.844 kb on + strand, within Rru_A3125at 3604.846 kb on + strand, within Rru_A3125at 3604.847 kb on - strand, within Rru_A3125at 3604.899 kb on + strand, within Rru_A3125at 3604.899 kb on + strand, within Rru_A3125at 3604.900 kb on - strand, within Rru_A3125at 3604.908 kb on + strand, within Rru_A3125at 3604.908 kb on + strand, within Rru_A3125at 3604.908 kb on + strand, within Rru_A3125at 3604.927 kb on + strand, within Rru_A3125at 3604.927 kb on + strand, within Rru_A3125at 3604.928 kb on - strand, within Rru_A3125at 3604.928 kb on - strand, within Rru_A3125

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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3,602,480 + Rru_A3123 0.12 +2.0
3,602,480 + Rru_A3123 0.12 +0.0
3,602,481 - Rru_A3123 0.12 +0.0
3,602,533 - Rru_A3123 0.19 +1.2
3,602,828 - Rru_A3123 0.57 +1.4
3,602,828 - Rru_A3123 0.57 +0.6
3,602,828 - Rru_A3123 0.57 +0.0
3,603,153 + +0.9
3,603,153 + +1.3
3,603,506 + Rru_A3124 0.41 +1.6
3,603,506 + Rru_A3124 0.41 +0.0
3,603,622 + Rru_A3124 0.55 +1.3
3,603,622 + Rru_A3124 0.55 +1.4
3,603,623 - Rru_A3124 0.55 -1.6
3,603,625 + Rru_A3124 0.56 +0.7
3,603,625 + Rru_A3124 0.56 +2.3
3,603,625 + Rru_A3124 0.56 -1.0
3,603,626 - Rru_A3124 0.56 +0.5
3,603,818 + Rru_A3124 0.78 +0.0
3,603,819 - Rru_A3124 0.79 +0.0
3,603,819 - Rru_A3124 0.79 +2.1
3,604,031 - +1.5
3,604,297 + Rru_A3125 0.25 +0.0
3,604,618 + Rru_A3125 0.51 +0.0
3,604,618 + Rru_A3125 0.51 +0.8
3,604,618 + Rru_A3125 0.51 +1.2
3,604,619 - Rru_A3125 0.51 +1.1
3,604,708 + Rru_A3125 0.58 +0.0
3,604,708 + Rru_A3125 0.58 -0.4
3,604,708 + Rru_A3125 0.58 +0.7
3,604,709 - Rru_A3125 0.58 +0.0
3,604,709 - Rru_A3125 0.58 +0.3
3,604,844 + Rru_A3125 0.69 +0.0
3,604,846 + Rru_A3125 0.70 +0.0
3,604,847 - Rru_A3125 0.70 +0.7
3,604,899 + Rru_A3125 0.74 +0.8
3,604,899 + Rru_A3125 0.74 +0.7
3,604,900 - Rru_A3125 0.74 +0.3
3,604,908 + Rru_A3125 0.75 +0.0
3,604,908 + Rru_A3125 0.75 +0.3
3,604,908 + Rru_A3125 0.75 +0.7
3,604,927 + Rru_A3125 0.76 +0.0
3,604,927 + Rru_A3125 0.76 +0.0
3,604,928 - Rru_A3125 0.76 -0.6
3,604,928 - Rru_A3125 0.76 +2.0

Or see this region's nucleotide sequence