Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3024

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3022 and Rru_A3023 overlap by 4 nucleotidesRru_A3023 and Rru_A3024 overlap by 4 nucleotidesRru_A3024 and Rru_A3025 are separated by 66 nucleotidesRru_A3025 and Rru_A3026 are separated by 70 nucleotides Rru_A3022: Rru_A3022 - hypothetical protein (NCBI), at 3,480,560 to 3,481,333 _A3022 Rru_A3023: Rru_A3023 - hypothetical protein (NCBI), at 3,481,330 to 3,481,788 _A3023 Rru_A3024: Rru_A3024 - Prolyl 4-hydroxylase, alpha subunit (NCBI), at 3,481,785 to 3,482,411 _A3024 Rru_A3025: Rru_A3025 - hypothetical protein (NCBI), at 3,482,478 to 3,482,792 _A3025 Rru_A3026: Rru_A3026 - HPr kinase (NCBI), at 3,482,863 to 3,483,885 _A3026 Position (kb) 3481 3482 3483Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3480.888 kb on - strand, within Rru_A3022at 3480.888 kb on - strand, within Rru_A3022at 3480.893 kb on + strand, within Rru_A3022at 3480.893 kb on + strand, within Rru_A3022at 3480.893 kb on + strand, within Rru_A3022at 3480.893 kb on + strand, within Rru_A3022at 3480.894 kb on - strand, within Rru_A3022at 3480.894 kb on - strand, within Rru_A3022at 3480.894 kb on - strand, within Rru_A3022at 3480.894 kb on - strand, within Rru_A3022at 3480.894 kb on - strand, within Rru_A3022at 3480.894 kb on - strand, within Rru_A3022at 3480.894 kb on - strand, within Rru_A3022at 3480.923 kb on + strand, within Rru_A3022at 3480.924 kb on - strand, within Rru_A3022at 3480.925 kb on + strand, within Rru_A3022at 3480.925 kb on + strand, within Rru_A3022at 3480.926 kb on - strand, within Rru_A3022at 3480.938 kb on + strand, within Rru_A3022at 3480.938 kb on + strand, within Rru_A3022at 3480.948 kb on - strand, within Rru_A3022at 3480.948 kb on - strand, within Rru_A3022at 3480.953 kb on + strand, within Rru_A3022at 3480.953 kb on + strand, within Rru_A3022at 3480.954 kb on - strand, within Rru_A3022at 3481.070 kb on + strand, within Rru_A3022at 3481.070 kb on + strand, within Rru_A3022at 3481.071 kb on - strand, within Rru_A3022at 3481.227 kb on - strand, within Rru_A3022at 3481.247 kb on + strand, within Rru_A3022at 3481.247 kb on + strand, within Rru_A3022at 3481.247 kb on + strand, within Rru_A3022at 3481.248 kb on - strand, within Rru_A3022at 3481.692 kb on + strand, within Rru_A3023at 3481.692 kb on + strand, within Rru_A3023at 3481.692 kb on + strand, within Rru_A3023at 3481.693 kb on - strand, within Rru_A3023at 3481.842 kb on + strandat 3481.842 kb on + strandat 3481.847 kb on + strandat 3481.847 kb on + strandat 3481.847 kb on + strandat 3481.848 kb on - strand, within Rru_A3024at 3481.848 kb on - strand, within Rru_A3024at 3481.848 kb on - strand, within Rru_A3024at 3482.144 kb on + strand, within Rru_A3024at 3482.144 kb on + strand, within Rru_A3024at 3482.144 kb on + strand, within Rru_A3024at 3482.144 kb on + strand, within Rru_A3024at 3482.144 kb on + strand, within Rru_A3024at 3482.145 kb on - strand, within Rru_A3024at 3482.145 kb on - strand, within Rru_A3024at 3482.145 kb on - strand, within Rru_A3024at 3482.145 kb on - strand, within Rru_A3024at 3482.145 kb on - strand, within Rru_A3024at 3482.151 kb on - strand, within Rru_A3024at 3482.151 kb on - strand, within Rru_A3024at 3482.205 kb on + strand, within Rru_A3024at 3482.205 kb on + strand, within Rru_A3024at 3482.205 kb on + strand, within Rru_A3024at 3482.205 kb on + strand, within Rru_A3024at 3482.205 kb on + strand, within Rru_A3024at 3482.205 kb on + strand, within Rru_A3024at 3482.206 kb on - strand, within Rru_A3024at 3482.206 kb on - strand, within Rru_A3024at 3482.206 kb on - strand, within Rru_A3024at 3482.206 kb on - strand, within Rru_A3024at 3482.206 kb on - strand, within Rru_A3024at 3482.206 kb on - strand, within Rru_A3024at 3482.206 kb on - strand, within Rru_A3024at 3482.209 kb on + strand, within Rru_A3024at 3482.209 kb on + strand, within Rru_A3024at 3482.209 kb on + strand, within Rru_A3024at 3482.210 kb on - strand, within Rru_A3024at 3482.210 kb on - strand, within Rru_A3024at 3482.210 kb on - strand, within Rru_A3024at 3482.210 kb on - strand, within Rru_A3024at 3482.284 kb on + strand, within Rru_A3024at 3482.284 kb on + strand, within Rru_A3024at 3482.285 kb on - strand, within Rru_A3024at 3482.389 kb on + strandat 3482.390 kb on - strandat 3482.390 kb on - strandat 3482.419 kb on + strandat 3482.420 kb on - strandat 3482.589 kb on + strand, within Rru_A3025at 3482.589 kb on + strand, within Rru_A3025at 3482.589 kb on + strand, within Rru_A3025at 3482.589 kb on + strand, within Rru_A3025at 3482.589 kb on + strand, within Rru_A3025at 3482.590 kb on - strand, within Rru_A3025at 3482.590 kb on - strand, within Rru_A3025at 3482.590 kb on - strand, within Rru_A3025at 3482.590 kb on - strand, within Rru_A3025at 3482.590 kb on - strand, within Rru_A3025at 3482.590 kb on - strand, within Rru_A3025at 3482.805 kb on + strandat 3482.820 kb on - strandat 3482.847 kb on + strandat 3482.980 kb on + strand, within Rru_A3026at 3482.980 kb on + strand, within Rru_A3026at 3482.980 kb on + strand, within Rru_A3026at 3482.980 kb on + strand, within Rru_A3026at 3482.981 kb on - strand, within Rru_A3026at 3482.981 kb on - strand, within Rru_A3026at 3482.981 kb on - strand, within Rru_A3026at 3482.981 kb on - strand, within Rru_A3026at 3482.981 kb on - strand, within Rru_A3026at 3482.981 kb on - strand, within Rru_A3026at 3482.981 kb on - strand, within Rru_A3026at 3482.981 kb on - strand, within Rru_A3026at 3482.981 kb on - strand, within Rru_A3026at 3482.986 kb on + strand, within Rru_A3026

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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3,480,888 - Rru_A3022 0.42 -0.0
3,480,888 - Rru_A3022 0.42 +3.2
3,480,893 + Rru_A3022 0.43 +1.3
3,480,893 + Rru_A3022 0.43 +2.5
3,480,893 + Rru_A3022 0.43 +1.3
3,480,893 + Rru_A3022 0.43 +0.3
3,480,894 - Rru_A3022 0.43 +0.8
3,480,894 - Rru_A3022 0.43 -0.0
3,480,894 - Rru_A3022 0.43 +0.6
3,480,894 - Rru_A3022 0.43 -0.0
3,480,894 - Rru_A3022 0.43 -1.3
3,480,894 - Rru_A3022 0.43 +0.8
3,480,894 - Rru_A3022 0.43 -0.0
3,480,923 + Rru_A3022 0.47 +0.6
3,480,924 - Rru_A3022 0.47 -0.0
3,480,925 + Rru_A3022 0.47 +1.2
3,480,925 + Rru_A3022 0.47 +1.0
3,480,926 - Rru_A3022 0.47 +1.2
3,480,938 + Rru_A3022 0.49 -0.0
3,480,938 + Rru_A3022 0.49 +2.8
3,480,948 - Rru_A3022 0.50 -0.0
3,480,948 - Rru_A3022 0.50 -0.0
3,480,953 + Rru_A3022 0.51 -0.4
3,480,953 + Rru_A3022 0.51 +2.3
3,480,954 - Rru_A3022 0.51 +0.4
3,481,070 + Rru_A3022 0.66 +0.8
3,481,070 + Rru_A3022 0.66 +0.5
3,481,071 - Rru_A3022 0.66 +1.0
3,481,227 - Rru_A3022 0.86 -0.0
3,481,247 + Rru_A3022 0.89 +0.6
3,481,247 + Rru_A3022 0.89 -0.4
3,481,247 + Rru_A3022 0.89 -0.0
3,481,248 - Rru_A3022 0.89 -0.3
3,481,692 + Rru_A3023 0.79 -0.0
3,481,692 + Rru_A3023 0.79 +1.2
3,481,692 + Rru_A3023 0.79 -0.9
3,481,693 - Rru_A3023 0.79 +1.0
3,481,842 + -0.0
3,481,842 + -0.0
3,481,847 + +1.5
3,481,847 + +2.3
3,481,847 + -0.0
3,481,848 - Rru_A3024 0.10 -0.0
3,481,848 - Rru_A3024 0.10 +1.4
3,481,848 - Rru_A3024 0.10 -1.0
3,482,144 + Rru_A3024 0.57 +0.2
3,482,144 + Rru_A3024 0.57 +1.1
3,482,144 + Rru_A3024 0.57 +1.6
3,482,144 + Rru_A3024 0.57 +1.0
3,482,144 + Rru_A3024 0.57 +1.2
3,482,145 - Rru_A3024 0.57 +0.6
3,482,145 - Rru_A3024 0.57 -0.0
3,482,145 - Rru_A3024 0.57 +0.8
3,482,145 - Rru_A3024 0.57 +1.3
3,482,145 - Rru_A3024 0.57 -0.0
3,482,151 - Rru_A3024 0.58 +0.7
3,482,151 - Rru_A3024 0.58 -0.0
3,482,205 + Rru_A3024 0.67 -0.3
3,482,205 + Rru_A3024 0.67 +1.0
3,482,205 + Rru_A3024 0.67 +1.2
3,482,205 + Rru_A3024 0.67 +3.7
3,482,205 + Rru_A3024 0.67 +0.8
3,482,205 + Rru_A3024 0.67 +0.9
3,482,206 - Rru_A3024 0.67 -0.0
3,482,206 - Rru_A3024 0.67 -0.0
3,482,206 - Rru_A3024 0.67 +0.7
3,482,206 - Rru_A3024 0.67 -0.0
3,482,206 - Rru_A3024 0.67 -2.0
3,482,206 - Rru_A3024 0.67 -0.0
3,482,206 - Rru_A3024 0.67 +1.2
3,482,209 + Rru_A3024 0.68 -0.6
3,482,209 + Rru_A3024 0.68 -0.0
3,482,209 + Rru_A3024 0.68 +1.3
3,482,210 - Rru_A3024 0.68 -0.8
3,482,210 - Rru_A3024 0.68 +1.1
3,482,210 - Rru_A3024 0.68 +1.5
3,482,210 - Rru_A3024 0.68 -0.0
3,482,284 + Rru_A3024 0.80 +1.0
3,482,284 + Rru_A3024 0.80 -0.0
3,482,285 - Rru_A3024 0.80 +0.5
3,482,389 + +0.3
3,482,390 - +1.1
3,482,390 - +1.8
3,482,419 + +2.0
3,482,420 - -1.6
3,482,589 + Rru_A3025 0.35 -0.0
3,482,589 + Rru_A3025 0.35 -1.6
3,482,589 + Rru_A3025 0.35 -0.0
3,482,589 + Rru_A3025 0.35 -0.5
3,482,589 + Rru_A3025 0.35 +0.8
3,482,590 - Rru_A3025 0.36 +1.2
3,482,590 - Rru_A3025 0.36 +1.1
3,482,590 - Rru_A3025 0.36 -0.2
3,482,590 - Rru_A3025 0.36 -0.0
3,482,590 - Rru_A3025 0.36 +0.8
3,482,590 - Rru_A3025 0.36 +1.1
3,482,805 + +0.7
3,482,820 - -0.0
3,482,847 + +1.9
3,482,980 + Rru_A3026 0.11 +1.1
3,482,980 + Rru_A3026 0.11 +0.4
3,482,980 + Rru_A3026 0.11 +1.2
3,482,980 + Rru_A3026 0.11 +1.2
3,482,981 - Rru_A3026 0.12 -0.0
3,482,981 - Rru_A3026 0.12 +0.7
3,482,981 - Rru_A3026 0.12 -1.6
3,482,981 - Rru_A3026 0.12 +0.9
3,482,981 - Rru_A3026 0.12 +1.0
3,482,981 - Rru_A3026 0.12 +1.0
3,482,981 - Rru_A3026 0.12 +1.5
3,482,981 - Rru_A3026 0.12 -0.0
3,482,981 - Rru_A3026 0.12 +1.0
3,482,986 + Rru_A3026 0.12 +0.6

Or see this region's nucleotide sequence