Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3022

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
3,479,740	+				+0.6
3,479,754	+				-0.0
3,479,755	-				+1.0
3,479,755	-				+0.5
3,479,953	+				-0.0
3,479,953	+				+1.6
3,479,953	+				+0.7
3,479,995	-				+1.4
3,480,018	-				-0.0
3,480,045	+				+0.9
3,480,045	+				-0.0
3,480,046	-				+0.6
3,480,116	+				+0.9
3,480,116	+				+0.4
3,480,117	-				-0.0
3,480,117	-				-0.0
3,480,145	+				+1.9
3,480,146	-				-1.0
3,480,146	-				+1.2
3,480,146	-				+1.3
3,480,152	-				+1.3
3,480,176	+				-0.3
3,480,177	-				-0.0
3,480,177	-				+0.7
3,480,239	+				-0.2
3,480,240	-				+1.8
3,480,306	-				-0.0
3,480,370	+				+1.4
3,480,371	-				+0.9
3,480,371	-				+1.3
3,480,407	+				-1.0
3,480,407	+				+2.0
3,480,408	-				-0.0
3,480,408	-				+0.4
3,480,434	-				-0.0
3,480,434	-				+1.4
3,480,888	-		Rru_A3022	0.42	-0.0
3,480,888	-		Rru_A3022	0.42	+3.2
3,480,893	+		Rru_A3022	0.43	+1.3
3,480,893	+		Rru_A3022	0.43	+2.5
3,480,893	+		Rru_A3022	0.43	+1.3
3,480,893	+		Rru_A3022	0.43	+0.3
3,480,894	-		Rru_A3022	0.43	+0.8
3,480,894	-		Rru_A3022	0.43	-0.0
3,480,894	-		Rru_A3022	0.43	+0.6
3,480,894	-		Rru_A3022	0.43	-0.0
3,480,894	-		Rru_A3022	0.43	-1.3
3,480,894	-		Rru_A3022	0.43	+0.8
3,480,894	-		Rru_A3022	0.43	-0.0
3,480,923	+		Rru_A3022	0.47	+0.6
3,480,924	-		Rru_A3022	0.47	-0.0
3,480,925	+		Rru_A3022	0.47	+1.2
3,480,925	+		Rru_A3022	0.47	+1.0
3,480,926	-		Rru_A3022	0.47	+1.2
3,480,938	+		Rru_A3022	0.49	-0.0
3,480,938	+		Rru_A3022	0.49	+2.8
3,480,948	-		Rru_A3022	0.50	-0.0
3,480,948	-		Rru_A3022	0.50	-0.0
3,480,953	+		Rru_A3022	0.51	-0.4
3,480,953	+		Rru_A3022	0.51	+2.3
3,480,954	-		Rru_A3022	0.51	+0.4
3,481,070	+		Rru_A3022	0.66	+0.8
3,481,070	+		Rru_A3022	0.66	+0.5
3,481,071	-		Rru_A3022	0.66	+1.0
3,481,227	-		Rru_A3022	0.86	-0.0
3,481,247	+		Rru_A3022	0.89	+0.6
3,481,247	+		Rru_A3022	0.89	-0.4
3,481,247	+		Rru_A3022	0.89	-0.0
3,481,248	-		Rru_A3022	0.89	-0.3
3,481,692	+		Rru_A3023	0.79	-0.0
3,481,692	+		Rru_A3023	0.79	+1.2
3,481,692	+		Rru_A3023	0.79	-0.9
3,481,693	-		Rru_A3023	0.79	+1.0
3,481,842	+				-0.0
3,481,842	+				-0.0
3,481,847	+				+1.5
3,481,847	+				+2.3
3,481,847	+				-0.0
3,481,848	-		Rru_A3024	0.10	-0.0
3,481,848	-		Rru_A3024	0.10	+1.4
3,481,848	-		Rru_A3024	0.10	-1.0
3,482,144	+		Rru_A3024	0.57	+0.2
3,482,144	+		Rru_A3024	0.57	+1.1
3,482,144	+		Rru_A3024	0.57	+1.6
3,482,144	+		Rru_A3024	0.57	+1.0
3,482,144	+		Rru_A3024	0.57	+1.2
3,482,145	-		Rru_A3024	0.57	+0.6
3,482,145	-		Rru_A3024	0.57	-0.0
3,482,145	-		Rru_A3024	0.57	+0.8
3,482,145	-		Rru_A3024	0.57	+1.3
3,482,145	-		Rru_A3024	0.57	-0.0
3,482,151	-		Rru_A3024	0.58	+0.7
3,482,151	-		Rru_A3024	0.58	-0.0
3,482,205	+		Rru_A3024	0.67	-0.3
3,482,205	+		Rru_A3024	0.67	+1.0
3,482,205	+		Rru_A3024	0.67	+1.2
3,482,205	+		Rru_A3024	0.67	+3.7
3,482,205	+		Rru_A3024	0.67	+0.8
3,482,205	+		Rru_A3024	0.67	+0.9
3,482,206	-		Rru_A3024	0.67	-0.0
3,482,206	-		Rru_A3024	0.67	-0.0
3,482,206	-		Rru_A3024	0.67	+0.7
3,482,206	-		Rru_A3024	0.67	-0.0
3,482,206	-		Rru_A3024	0.67	-2.0
3,482,206	-		Rru_A3024	0.67	-0.0
3,482,206	-		Rru_A3024	0.67	+1.2
3,482,209	+		Rru_A3024	0.68	-0.6
3,482,209	+		Rru_A3024	0.68	-0.0
3,482,209	+		Rru_A3024	0.68	+1.3
3,482,210	-		Rru_A3024	0.68	-0.8
3,482,210	-		Rru_A3024	0.68	+1.1
3,482,210	-		Rru_A3024	0.68	+1.5
3,482,210	-		Rru_A3024	0.68	-0.0
3,482,284	+		Rru_A3024	0.80	+1.0
3,482,284	+		Rru_A3024	0.80	-0.0
3,482,285	-		Rru_A3024	0.80	+0.5