Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2854

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
3,284,540	+		Rru_A2853	0.53	+1.6
3,284,561	+		Rru_A2853	0.54	-0.0
3,284,561	+		Rru_A2853	0.54	+1.1
3,284,561	+		Rru_A2853	0.54	+2.0
3,284,562	-		Rru_A2853	0.54	+1.4
3,284,562	-		Rru_A2853	0.54	+0.9
3,284,562	-		Rru_A2853	0.54	+1.6
3,284,562	-		Rru_A2853	0.54	+1.0
3,284,562	-		Rru_A2853	0.54	-0.0
3,284,562	-		Rru_A2853	0.54	+2.2
3,284,563	+		Rru_A2853	0.54	-0.0
3,284,564	-		Rru_A2853	0.54	+1.0
3,284,564	-		Rru_A2853	0.54	+1.6
3,284,600	-		Rru_A2853	0.57	-0.4
3,284,720	+		Rru_A2853	0.64	-0.0
3,284,721	-		Rru_A2853	0.64	+3.1
3,284,721	-		Rru_A2853	0.64	+1.4
3,284,735	-		Rru_A2853	0.65	-0.0
3,284,735	-		Rru_A2853	0.65	-0.0
3,284,735	-		Rru_A2853	0.65	-0.0
3,284,759	+		Rru_A2853	0.67	+0.1
3,284,759	+		Rru_A2853	0.67	+2.2
3,284,759	+		Rru_A2853	0.67	+2.9
3,284,760	-		Rru_A2853	0.67	+0.7
3,284,760	-		Rru_A2853	0.67	+1.3
3,284,760	-		Rru_A2853	0.67	+1.5
3,284,819	+		Rru_A2853	0.71	-0.0
3,284,820	-		Rru_A2853	0.71	-0.0
3,284,820	-		Rru_A2853	0.71	+0.5
3,284,820	-		Rru_A2853	0.71	-0.0
3,284,820	-		Rru_A2853	0.71	+0.7
3,284,820	-		Rru_A2853	0.71	+1.1
3,284,820	-		Rru_A2853	0.71	+1.0
3,284,822	+		Rru_A2853	0.71	+1.1
3,284,822	+		Rru_A2853	0.71	-0.0
3,284,822	+		Rru_A2853	0.71	-0.0
3,284,823	-		Rru_A2853	0.71	+1.6
3,284,823	-		Rru_A2853	0.71	-0.0
3,284,823	-		Rru_A2853	0.71	-0.0
3,285,119	+				+0.6
3,285,119	+				+2.0
3,285,120	-				+1.3
3,285,120	-				+0.7
3,285,263	+				+1.0
3,285,264	-				-0.0
3,285,264	-				-0.0
3,285,269	+				-0.0
3,285,269	+				+1.5
3,285,270	-				-1.0
3,285,270	-				+1.2
3,285,270	-				-0.0
3,285,275	-				-0.0
3,285,798	+		Rru_A2854	0.29	-0.1
3,286,159	-		Rru_A2854	0.50	+2.0
3,286,179	+		Rru_A2854	0.51	+0.6
3,286,179	+		Rru_A2854	0.51	-0.0
3,286,179	+		Rru_A2854	0.51	-0.0
3,286,179	+		Rru_A2854	0.51	+1.8
3,286,180	-		Rru_A2854	0.51	-0.3
3,286,180	-		Rru_A2854	0.51	-0.0
3,286,180	-		Rru_A2854	0.51	-0.0
3,286,180	-		Rru_A2854	0.51	+0.7
3,286,180	-		Rru_A2854	0.51	+1.5
3,287,290	-				-0.0
3,287,396	-		Rru_A2855	0.13	-0.0
3,287,396	-		Rru_A2855	0.13	+1.2
3,287,436	+		Rru_A2855	0.14	+0.9
3,287,438	+		Rru_A2855	0.14	-0.0
3,287,438	+		Rru_A2855	0.14	+0.5
3,287,438	+		Rru_A2855	0.14	-0.0
3,287,439	-		Rru_A2855	0.14	-0.0
3,287,439	-		Rru_A2855	0.14	+1.1
3,287,439	-		Rru_A2855	0.14	-0.0
3,287,439	-		Rru_A2855	0.14	+1.1
3,287,474	+		Rru_A2855	0.15	+0.2
3,287,507	+		Rru_A2855	0.17	-0.0
3,287,516	+		Rru_A2855	0.17	+0.9
3,287,516	+		Rru_A2855	0.17	-0.0
3,287,516	+		Rru_A2855	0.17	-0.0
3,287,516	+		Rru_A2855	0.17	+1.9
3,287,516	+		Rru_A2855	0.17	-0.0
3,287,517	-		Rru_A2855	0.17	+1.7
3,287,517	-		Rru_A2855	0.17	-0.0
3,287,517	-		Rru_A2855	0.17	+1.3
3,287,517	-		Rru_A2855	0.17	+0.8
3,287,517	-		Rru_A2855	0.17	-0.0
3,287,517	-		Rru_A2855	0.17	+1.0
3,287,517	-		Rru_A2855	0.17	+1.2
3,287,682	+		Rru_A2855	0.23	-0.0
3,287,682	+		Rru_A2855	0.23	+3.0
3,287,682	+		Rru_A2855	0.23	+0.7
3,287,683	-		Rru_A2855	0.23	+1.1
3,287,683	-		Rru_A2855	0.23	+0.4
3,287,685	+		Rru_A2855	0.23	+0.3
3,287,685	+		Rru_A2855	0.23	+2.2
3,287,685	+		Rru_A2855	0.23	-0.0
3,287,685	+		Rru_A2855	0.23	-0.0
3,287,884	-		Rru_A2855	0.30	-0.0
3,287,900	+		Rru_A2855	0.31	+1.1
3,287,900	+		Rru_A2855	0.31	+0.2
3,287,900	+		Rru_A2855	0.31	-1.0
3,287,901	-		Rru_A2855	0.31	+1.6
3,287,901	-		Rru_A2855	0.31	+2.5